I suspect there is more than one version of Lucene jar in classpath.
On Wed, Jun 12, 2013 at 3:24 PM, Chen, Pei <[email protected]>wrote: > I just took a look at the 3.0.0 release tag again. > Note: cTAKES 3.0 still needs Lucene 3.x (it should work with the lucene > 3.x jar and 3.0 of resources: > > http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.0.1.zip(not > ctakes-resources-3.1.0.zip which was rebuilt for Lucene 4). > http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.0.0-incubating/pom.xml > > The indexes and resources have been upgraded to Lucene 4.x only in trunk > and the future cTAKES 3.1 release. > > Could you confirm your setup again?- i.e. A lucene 4.x jar shouldn't > appear in cTAKES 3.0... > --Pei > > > -----Original Message----- > > From: Aveek Mukhopadhyay > > [mailto:[email protected]] > > Sent: Wednesday, June 12, 2013 3:17 PM > > To: [email protected] > > Subject: RE: Resource Initialization Exception with cTakes 3.0.0 > > > > > > Hi Pei, > > > > With the AggregatePlaintextProcessor.xml provided by cTakes themselves, > it > > throws up the error while loading the indexes for drug_index. > > > > INFO LuceneIndexReaderResourceImpl - Loading Lucene Index into memory: > > /home/aveek/workspace/ctakes/ctakes-dictionary- > > lookup/resources/org/apache/ctakes/dictionary/lookup/drug_index > > > > With the AggregatePlaintextUMLSProcessor.xml provided by cTakes, it > > throws up the error for OrangeBook. > > > > LuceneIndexReaderResourceImpl - Loading Lucene Index into memory: > > /home/aveek/workspace/ctakes/ctakes-dictionary- > > lookup/resources/org/apache/ctakes/dictionary/lookup/OrangeBook > > > > Thanks & Regards, > > Aveek > > ________________________________________ > > From: Chen, Pei [[email protected]] > > Sent: Wednesday, June 12, 2013 2:35 PM > > To: [email protected] > > Subject: RE: Resource Initialization Exception with cTakes 3.0.0 > > > > Hi Aveek, > > Could you also include the full path/directory to the index that causing > the > > error? > > > > I vaguely recall that all of the lucene indexes have been upgraded to > 4.x: > > https://issues.apache.org/jira/browse/CTAKES-12 > > > > Thanks, > > Pei > > > > > -----Original Message----- > > > From: Aveek Mukhopadhyay > > > [mailto:[email protected]] > > > Sent: Wednesday, June 12, 2013 1:37 PM > > > To: [email protected] > > > Subject: Resource Initialization Exception with cTakes 3.0.0 > > > > > > > > > > > > Hi, > > > > > > I am having problems loading the AE with Plain text processor. It > > > shows up the ResourceInitializationException at a point where it is > > > loading Lucene index into memory. I have Lucene.jar version of 4.2.1 > > > in the classpath. Can I get any help regarding this problem, is there > anything > > I am doing wrong? > > > > > > > > > Thanks & Regards, > > > Aveek > > > > > > Here is a snippet from the log file > > > > > > 6/12/13 1:31:19 PM - 13: > > > org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: > > > Exception occurred > > > org.apache.uima.resource.ResourceInitializationException > > > at > > > > > org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(Luc > > > eneIndexReaderResourceImpl.java:80) > > > at > > > > > org.apache.uima.resource.impl.ResourceManager_impl.registerResource(Re > > > sourceManager_impl.java:603) > > > at > > > org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalR > > > es > > > ources(ResourceManager_impl.java:442) > > > at > > > > > org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase. > > > java:153) > > > at > > > org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize > > > (Anal > > > ysisEngineImplBase.java:157) > > > at > > > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.init > > > ialize > > > (PrimitiveAnalysisEngine_impl.java:123) > > > at > > > > > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analys > > > i > > > sEngineFactory_impl.java:94) > > > at > > > > > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C > > > ompositeResourceFactory_impl.java:62) > > > at > > > > > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java: > > > 269) > > > at > > > > > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework > > > .java:387) > > > at > > > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java: > > > 25 > > > 4) > > > at > > > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.init > > > AS > > > B(AggregateAnalysisEngine_impl.java:431) > > > at > > > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.init > > > ializ > > > eAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > > > at > > > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.init > > > ializ > > > e(AggregateAnalysisEngine_impl.java:185) > > > at > > > > > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analys > > > i > > > sEngineFactory_impl.java:94) > > > at > > > > > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C > > > ompositeResourceFactory_impl.java:62) > > > at > > > > > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java: > > > 269) > > > at > > > > > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework > > > .java:354) > > > at > > > org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) > > > at > > > > > org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:47 > > > 7) > > > at > > > org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerf > > > o > > > rmed(AnnotatorOpenEventHandler.java:52) > > > at > > > > > javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018) > > > at > > > javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java > > > :2 > > > 341) > > > at > > > > > javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel. > > > java:402) > > > at > > > > > javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) > > > at javax.swing.AbstractButton.doClick(AbstractButton.java:376) > > > at > > > > > javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833) > > > at > > > > > javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMen > > > uItemUI.java:877) > > > at java.awt.Component.processMouseEvent(Component.java:6505) > > > at > > > javax.swing.JComponent.processMouseEvent(JComponent.java:3321) > > > at java.awt.Component.processEvent(Component.java:6270) > > > at java.awt.Container.processEvent(Container.java:2229) > > > at java.awt.Component.dispatchEventImpl(Component.java:4861) > > > at java.awt.Container.dispatchEventImpl(Container.java:2287) > > > at java.awt.Component.dispatchEvent(Component.java:4687) > > > at > > > java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832) > > > at > > > java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492) > > > at > > > java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422) > > > at java.awt.Container.dispatchEventImpl(Container.java:2273) > > > at java.awt.Window.dispatchEventImpl(Window.java:2719) > > > at java.awt.Component.dispatchEvent(Component.java:4687) > > > at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:723) > > > at java.awt.EventQueue.access$200(EventQueue.java:103) > > > at java.awt.EventQueue$3.run(EventQueue.java:682) > > > at java.awt.EventQueue$3.run(EventQueue.java:680) > > > at java.security.AccessController.doPrivileged(Native Method) > > > at > > > java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDom > > > ain > > > .java:76) > > > at > > > java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDom > > > ain > > > .java:87) > > > at java.awt.EventQueue$4.run(EventQueue.java:696) > > > at java.awt.EventQueue$4.run(EventQueue.java:694) > > > at java.security.AccessController.doPrivileged(Native Method) > > > at > > > java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDom > > > ain > > > .java:76) > > > at java.awt.EventQueue.dispatchEvent(EventQueue.java:693) > > > at > > > > > java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThre > > > ad.java:244) > > > at > > > > > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.j > > > a > > > va:163) > > > at > > > > > java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThre > > > ad.java:151) > > > at > > > > > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:147) > > > at > > > > > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:139) > > > at java.awt.EventDispatchThread.run(EventDispatchThread.java:97) > > > Caused by: org.apache.lucene.index.IndexFormatTooOldException: Format > > > version is not supported (resource: > > > ChecksumIndexInput(RAMInputStream(name=segments))): -1 (needs to > > be > > > between -9 and -11). This version of Lucene only supports indexes > > > created with release 3.0 and later. > > > at > > > > > org.apache.lucene.codecs.lucene3x.Lucene3xSegmentInfoReader.readLegac > > > ySegmentInfo(Lucene3xSegmentInfoReader.java:128) > > > at > > > > > org.apache.lucene.codecs.lucene3x.Lucene3xSegmentInfoReader.readLegac > > > yInfos(Lucene3xSegmentInfoReader.java:54) > > > at > > > org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:312) > > > at > > > > > org.apache.lucene.index.StandardDirectoryReader$1.doBody(StandardDirec > > > toryReader.java:56) > > > at > > > > > org.apache.lucene.index.SegmentInfos$FindSegmentsFile.run(SegmentInfo > > > s.java:783) > > > at > > > > > org.apache.lucene.index.StandardDirectoryReader.open(StandardDirectory > > > R > > > eader.java:52) > > > at > > > org.apache.lucene.index.DirectoryReader.open(DirectoryReader.java:66) > > > at > > > org.apache.lucene.index.IndexReader.open(IndexReader.java:291) > > > at > > > > > org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(Luc > > > eneIndexReaderResourceImpl.java:70) > > > ... 58 more > >
