Paula,
I moved the sectionizer to trunk now and added the xml descriptor for it.
In your Aggregate Descriptor, just add:
<delegateAnalysisEngine key="CDASegmentAnnotator">
<import
location="../../../ctakes-core/desc/analysis_engine/CDASegmentAnnotator.xml"/>
</delegateAnalysisEngine>
.
<node>CDASegmentAnnotator</node>
If you would like to see it wired together via uimaFIT, check out the test case:
ctakes-core/src/test/java/org/apache/ctakes/core/ae/TestCDASegmentAnnotator.java
Hope that helps.
It might be even worthwhile defaulting to this instead of the SimpleSegment
(since simple segment does nothing more than span the entire document...)
--Pei
From: digital paula [mailto:[email protected]]
Sent: Tuesday, December 03, 2013 1:51 PM
To: [email protected]
Subject: cTAKES Sectionizer: how to integrate it with clinical pipeline
Hi Pei,
Last week we discussed briefly the sectionizer and now that I have it loaded
successfully I just need to integrate it in the clinical pipeline.
The sectionizer doesn't have a desc folder with associated XML descriptor and I
understand that things are moving towards UIMAfit so that's probably the reason
why it doesn't. Can you provide some guidance on what you'd recommend for
testing the sectionizer? That is, should I just create the XML Descriptor
using one of the reference materials from the UIMA website for creating
descriptors or would you recommend using UIMAfit? If the latter, can you
provide assistance of how to integrate the sectionizer into the
AggregatePlaintext AE using UIMAfit.
Thanks.
Regards,
Paula
