Thank you, Pei. I will test this out tomorrow.
Regards, Paula > From: [email protected] > To: [email protected] > Subject: RE: cTAKES Sectionizer: how to integrate it with clinical pipeline > Date: Tue, 3 Dec 2013 20:38:22 +0000 > > Paula, > I moved the sectionizer to trunk now and added the xml descriptor for it. > > In your Aggregate Descriptor, just add: > <delegateAnalysisEngine key="CDASegmentAnnotator"> > <import > location="../../../ctakes-core/desc/analysis_engine/CDASegmentAnnotator.xml"/> > </delegateAnalysisEngine> > . > <node>CDASegmentAnnotator</node> > > If you would like to see it wired together via uimaFIT, check out the test > case: > ctakes-core/src/test/java/org/apache/ctakes/core/ae/TestCDASegmentAnnotator.java > > Hope that helps. > It might be even worthwhile defaulting to this instead of the SimpleSegment > (since simple segment does nothing more than span the entire document...) > --Pei > > > > From: digital paula [mailto:[email protected]] > Sent: Tuesday, December 03, 2013 1:51 PM > To: [email protected] > Subject: cTAKES Sectionizer: how to integrate it with clinical pipeline > > Hi Pei, > > Last week we discussed briefly the sectionizer and now that I have it loaded > successfully I just need to integrate it in the clinical pipeline. > > The sectionizer doesn't have a desc folder with associated XML descriptor and > I understand that things are moving towards UIMAfit so that's probably the > reason why it doesn't. Can you provide some guidance on what you'd recommend > for testing the sectionizer? That is, should I just create the XML > Descriptor using one of the reference materials from the UIMA website for > creating descriptors or would you recommend using UIMAfit? If the latter, > can you provide assistance of how to integrate the sectionizer into the > AggregatePlaintext AE using UIMAfit. > > Thanks. > > Regards, > Paula
