What is your CTAKES_HOME set to?
-- Karthik Sarma UCLA Medical Scientist Training Program Class of 20?? Member, UCLA Medical Imaging & Informatics Lab Member, CA Delegation to the House of Delegates of the American Medical Association [email protected] gchat: [email protected] linkedin: www.linkedin.com/in/ksarma On Mon, Dec 23, 2013 at 8:50 PM, Joshua Weiner <[email protected]>wrote: > Where do you see this James? > > Here is my code... I see the -cp parameter and its arguements right after > "mypassword" ... right? > > :okHome > cd %CTAKES_HOME% > java -Dctakes.umlsuser=joshuawiener2 -Dctakes.umlspw=mypassword -cp > "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc/;%CTAKES_HOME%/resources/" > -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xms512M > -Xmx2048M org.apache.uima.tools.cvd.CVD > > :end > > > On Mon, Dec 23, 2013 at 9:44 PM, Masanz, James J. > <[email protected]>wrote: > >> I see now that the java command in your previous post didn’t include >> the -cp parameter and its arguments. >> >> Please add that back in. >> >> >> >> >> >> *From:* [email protected] [mailto:[email protected]] *On >> Behalf Of *Joshua Weiner >> *Sent:* Monday, December 23, 2013 8:12 PM >> >> *To:* [email protected] >> *Subject:* Re: Adding UMLS username and password .... >> >> >> >> James, >> >> >> >> I appreciate your persistence, it means quite a lot. Unfortunately, even >> with your latest attempt I still get the same error: >> >> Error: Could not find or load main class org.apache.uima.tools.cvd.CVD >> >> >> I am on windows 8, 8gb of ram. >> >> >> >> Thank you for your persistence. >> >> >> Josh >> >> >> >> On Mon, Dec 23, 2013 at 9:07 PM, Masanz, James J. <[email protected]> >> wrote: >> >> Try this >> >> CD C:\apache-ctakes-3.1.0 >> >> set CTAKES_HOME=C:\apache-ctakes-3.1.0 >> >> then enter the java command from the command line that you were entering >> >> >> >> Note: in my previous post, it was my mistake of including the percent >> signs in the SET command. >> >> >> >> I meant to suggest >> >> set CTAKES_HOME="" >> >> >> >> >> >> *From:* [email protected] [mailto:[email protected]] *On >> Behalf Of *Joshua Weiner >> *Sent:* Monday, December 23, 2013 7:55 PM >> >> >> *To:* [email protected] >> *Subject:* Re: Adding UMLS username and password .... >> >> >> >> James, >> >> >> Thank you for your continual prompt responses. Unfortunately, even after >> I did set%CTAKES_HOME%="" I still get the following errror: >> >> >> >> C:\apache-ctakes-3.1.0>java -Dctakes.umlsuser=joshuawiener2 >> =DCtakes.umlspw=mypasswwordCTAKES_HOMECTAKES_HOMECTAKES_HOME/C:\apache-ctakes-3.1.0/config/log4j.xml >> -Xmd512M -Xmx2048M org.apache.uima.tools.cvd.CVD >> >> Error: Could not find or load main class org.apache.uima.tools.cvd.CVD >> >> >> >> once again my code in the runctakesCVD.bat file is: >> >> >> >> >> >> :okHome >> >> cd %CTAKES_HOME% >> >> java -Dctakes.umlsuser=joshuawiener2 -Dctakes.umlspw=passwordd -cp >> "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc/;%CTAKES_HOME%/resources/" >> -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xms512M >> -Xmx2048M org.apache.uima.tools.cvd.CVD >> >> >> >> :end >> >> >> >> On Mon, Dec 23, 2013 at 8:45 PM, Masanz, James J. <[email protected]> >> wrote: >> >> >> >> You might try from the command line >> >> >> >> echo %CTAKES_HOME% >> >> >> >> or even better for debug purposes put it just before the CD >> %CTAKES_HOME% line. >> >> >> >> It should respond with the parent of the bin, desc, and resources >> directory. >> >> >> >> If it responds with something else, try clearing %CTAKES_HOME% by >> entering the following on the command line and then trying the bat file >> again. >> >> set %CTAKES_HOME%="" >> >> >> >> Oh, and you’ll probably want to change -Xmx1024M to be –Xmx2048M or >> even larger or you will run into a heap space error for many parts of >> cTAKES. >> >> >> >> -- James >> >> >> >> >> >> *From:* [email protected] [mailto:[email protected]] *On >> Behalf Of *Joshua Weiner >> *Sent:* Monday, December 23, 2013 7:36 PM >> *To:* [email protected] >> *Subject:* Re: Adding UMLS username and password .... >> >> >> >> James, >> >> >> Thanks so much for your response. When I remove the brackets I still get >> an error, I get: >> >> >> >> "Error: could not find or load main class org.apache.uima.tools.cvd.CVD >> >> >> >> >> >> Thank you so much for your help. I appreciate your dilligence. >> >> >> Sincerely, >> >> Josh >> >> >> >> On Mon, Dec 23, 2013 at 8:32 PM, Masanz, James J. <[email protected]> >> wrote: >> >> Sorry for the confusion, don’t include the brackets, so it should look >> like this: >> >> >> >> -Dctakes.umlsuser=joshuawiener2 -Dctakes.umlspw=mypassword >> >> >> >> *From:* [email protected] [mailto:[email protected]] *On >> Behalf Of *Joshua Weiner >> *Sent:* Monday, December 23, 2013 7:28 PM >> *To:* [email protected] >> *Subject:* Adding UMLS username and password .... >> >> >> >> >> >> Hey guys, >> >> >> >> I know this is probably a dumb question but I can't for the life of me >> figure it out. I finally got a UMLS username and password, but I don't >> think I am updating the BAT files correctly... here is what I did: note my >> username is joshuaweiner2 and my password (for this example) is mypasswordd >> (see below).... I now can't get the CVD to run. >> >> >> Thank you for your help... >> >> >> >> :okHome >> >> cd %CTAKES_HOME% >> >> java -Dctakes.umlsuser=<joshuawiener2> -Dctakes.umlspw=<mypasswordd> -cp >> "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc/;%CTAKES_HOME%/resources/" >> -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xms512M >> -Xmx1024M org.apache.uima.tools.cvd.CVD >> >> >> >> :end >> >> >> >> >> -- >> Joshua S. Weiner >> >> [email protected] >> >> 201.638.0047 >> >> >> >> >> >> -- >> Joshua S. Weiner >> >> [email protected] >> >> 201.638.0047 >> >> >> >> >> >> -- >> Joshua S. Weiner >> >> [email protected] >> >> 201.638.0047 >> >> >> >> >> >> -- >> Joshua S. Weiner >> >> [email protected] >> >> 201.638.0047 >> > > > > -- > Joshua S. Weiner > [email protected] > 201.638.0047 >
