based on the code below I see the home directory as being set to the current_dir which is C:\apache-ctakes-3.0.1..............
I also tried using James code to re-set the directory .. did not work. @REM Guess CTAKES_HOME if not defined set CURRENT_DIR=%cd% if not "%CTAKES_HOME%" == "" goto gotHome set CTAKES_HOME=%CURRENT_DIR% if exist "%CTAKES_HOME%\bin\runctakesCVD.bat" goto okHome cd .. set CTAKES_HOME=%cd% :gotHome if exist "%CTAKES_HOME%\bin\runctakesCVD.bat" goto okHome echo The CTAKES_HOME environment variable is not defined correctly echo This environment variable is needed to run this program goto end :okHome cd %CTAKES_HOME% java -Dctakes.umlsuser=joshuawiener2 -Dctakes.umlspw=56Kmartin% -cp "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc/;%CTAKES_HOME%/resources/" -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xms512M -Xmx2048M org.apache.uima.tools.cvd.CVD :end On Mon, Dec 23, 2013 at 9:55 PM, Karthik Sarma <[email protected]> wrote: > What is your CTAKES_HOME set to? > > > > > > -- > Karthik Sarma > UCLA Medical Scientist Training Program Class of 20?? > Member, UCLA Medical Imaging & Informatics Lab > Member, CA Delegation to the House of Delegates of the American Medical > Association > [email protected] > gchat: [email protected] > linkedin: www.linkedin.com/in/ksarma > > > On Mon, Dec 23, 2013 at 8:50 PM, Joshua Weiner <[email protected]>wrote: > >> Where do you see this James? >> >> Here is my code... I see the -cp parameter and its arguements right after >> "mypassword" ... right? >> >> :okHome >> cd %CTAKES_HOME% >> java -Dctakes.umlsuser=joshuawiener2 -Dctakes.umlspw=mypassword -cp >> "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc/;%CTAKES_HOME%/resources/" >> -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xms512M >> -Xmx2048M org.apache.uima.tools.cvd.CVD >> >> :end >> >> >> On Mon, Dec 23, 2013 at 9:44 PM, Masanz, James J. >> <[email protected]>wrote: >> >>> I see now that the java command in your previous post didn’t include >>> the -cp parameter and its arguments. >>> >>> Please add that back in. >>> >>> >>> >>> >>> >>> *From:* [email protected] [mailto:[email protected]] *On >>> Behalf Of *Joshua Weiner >>> *Sent:* Monday, December 23, 2013 8:12 PM >>> >>> *To:* [email protected] >>> *Subject:* Re: Adding UMLS username and password .... >>> >>> >>> >>> James, >>> >>> >>> >>> I appreciate your persistence, it means quite a lot. Unfortunately, even >>> with your latest attempt I still get the same error: >>> >>> Error: Could not find or load main class org.apache.uima.tools.cvd.CVD >>> >>> >>> I am on windows 8, 8gb of ram. >>> >>> >>> >>> Thank you for your persistence. >>> >>> >>> Josh >>> >>> >>> >>> On Mon, Dec 23, 2013 at 9:07 PM, Masanz, James J. <[email protected]> >>> wrote: >>> >>> Try this >>> >>> CD C:\apache-ctakes-3.1.0 >>> >>> set CTAKES_HOME=C:\apache-ctakes-3.1.0 >>> >>> then enter the java command from the command line that you were entering >>> >>> >>> >>> Note: in my previous post, it was my mistake of including the percent >>> signs in the SET command. >>> >>> >>> >>> I meant to suggest >>> >>> set CTAKES_HOME="" >>> >>> >>> >>> >>> >>> *From:* [email protected] [mailto:[email protected]] *On >>> Behalf Of *Joshua Weiner >>> *Sent:* Monday, December 23, 2013 7:55 PM >>> >>> >>> *To:* [email protected] >>> *Subject:* Re: Adding UMLS username and password .... >>> >>> >>> >>> James, >>> >>> >>> Thank you for your continual prompt responses. Unfortunately, even after >>> I did set%CTAKES_HOME%="" I still get the following errror: >>> >>> >>> >>> C:\apache-ctakes-3.1.0>java -Dctakes.umlsuser=joshuawiener2 >>> =DCtakes.umlspw=mypasswwordCTAKES_HOMECTAKES_HOMECTAKES_HOME/C:\apache-ctakes-3.1.0/config/log4j.xml >>> -Xmd512M -Xmx2048M org.apache.uima.tools.cvd.CVD >>> >>> Error: Could not find or load main class org.apache.uima.tools.cvd.CVD >>> >>> >>> >>> once again my code in the runctakesCVD.bat file is: >>> >>> >>> >>> >>> >>> :okHome >>> >>> cd %CTAKES_HOME% >>> >>> java -Dctakes.umlsuser=joshuawiener2 -Dctakes.umlspw=passwordd -cp >>> "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc/;%CTAKES_HOME%/resources/" >>> -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xms512M >>> -Xmx2048M org.apache.uima.tools.cvd.CVD >>> >>> >>> >>> :end >>> >>> >>> >>> On Mon, Dec 23, 2013 at 8:45 PM, Masanz, James J. <[email protected]> >>> wrote: >>> >>> >>> >>> You might try from the command line >>> >>> >>> >>> echo %CTAKES_HOME% >>> >>> >>> >>> or even better for debug purposes put it just before the CD >>> %CTAKES_HOME% line. >>> >>> >>> >>> It should respond with the parent of the bin, desc, and resources >>> directory. >>> >>> >>> >>> If it responds with something else, try clearing %CTAKES_HOME% by >>> entering the following on the command line and then trying the bat file >>> again. >>> >>> set %CTAKES_HOME%="" >>> >>> >>> >>> Oh, and you’ll probably want to change -Xmx1024M to be –Xmx2048M or >>> even larger or you will run into a heap space error for many parts of >>> cTAKES. >>> >>> >>> >>> -- James >>> >>> >>> >>> >>> >>> *From:* [email protected] [mailto:[email protected]] *On >>> Behalf Of *Joshua Weiner >>> *Sent:* Monday, December 23, 2013 7:36 PM >>> *To:* [email protected] >>> *Subject:* Re: Adding UMLS username and password .... >>> >>> >>> >>> James, >>> >>> >>> Thanks so much for your response. When I remove the brackets I still get >>> an error, I get: >>> >>> >>> >>> "Error: could not find or load main class org.apache.uima.tools.cvd.CVD >>> >>> >>> >>> >>> >>> Thank you so much for your help. I appreciate your dilligence. >>> >>> >>> Sincerely, >>> >>> Josh >>> >>> >>> >>> On Mon, Dec 23, 2013 at 8:32 PM, Masanz, James J. <[email protected]> >>> wrote: >>> >>> Sorry for the confusion, don’t include the brackets, so it should look >>> like this: >>> >>> >>> >>> -Dctakes.umlsuser=joshuawiener2 -Dctakes.umlspw=mypassword >>> >>> >>> >>> *From:* [email protected] [mailto:[email protected]] *On >>> Behalf Of *Joshua Weiner >>> *Sent:* Monday, December 23, 2013 7:28 PM >>> *To:* [email protected] >>> *Subject:* Adding UMLS username and password .... >>> >>> >>> >>> >>> >>> Hey guys, >>> >>> >>> >>> I know this is probably a dumb question but I can't for the life of me >>> figure it out. I finally got a UMLS username and password, but I don't >>> think I am updating the BAT files correctly... here is what I did: note my >>> username is joshuaweiner2 and my password (for this example) is mypasswordd >>> (see below).... I now can't get the CVD to run. >>> >>> >>> Thank you for your help... >>> >>> >>> >>> :okHome >>> >>> cd %CTAKES_HOME% >>> >>> java -Dctakes.umlsuser=<joshuawiener2> -Dctakes.umlspw=<mypasswordd> -cp >>> "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc/;%CTAKES_HOME%/resources/" >>> -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xms512M >>> -Xmx1024M org.apache.uima.tools.cvd.CVD >>> >>> >>> >>> :end >>> >>> >>> >>> >>> -- >>> Joshua S. Weiner >>> >>> [email protected] >>> >>> 201.638.0047 >>> >>> >>> >>> >>> >>> -- >>> Joshua S. Weiner >>> >>> [email protected] >>> >>> 201.638.0047 >>> >>> >>> >>> >>> >>> -- >>> Joshua S. Weiner >>> >>> [email protected] >>> >>> 201.638.0047 >>> >>> >>> >>> >>> >>> -- >>> Joshua S. Weiner >>> >>> [email protected] >>> >>> 201.638.0047 >>> >> >> >> >> -- >> Joshua S. Weiner >> [email protected] >> 201.638.0047 >> > > -- Joshua S. Weiner [email protected] 201.638.0047
