Hey Sean, Thanx for the reply. I think what you are talking about is the clinical-pipeline but I want to run Drug - NER pipeline. The external resources provided has a dictionary named rxnorm_index which has around 162563 terms in it. So I guess it should be able to annotate that, but I believe I am not using it correctly.
Regards, Ravi On Mon, Mar 10, 2014 at 9:44 PM, Murphy, Sean P. <[email protected]>wrote: > Good morning Ravi, > > > > I believe only a sample dictionary is provided which uses a simple case > where 'aspirin' would be annotated. The UMLS provided dictionary will need > to be enabled to access the actual rxnorm_index. You will require a UMLS > profile to access the dictionary resource provided. There should be details > on how to include the UMLS profile and password information in your > environment. Let me know if you need further assistance. > > Thanks, > > ~Sean > > > > *From:* ravi garg [mailto:[email protected]] > *Sent:* Monday, March 10, 2014 11:05 AM > *To:* [email protected] > *Subject:* How to use Drug NER > > > > Hey, > > I am using DrugAggregatePlainTextProcessor.xml as my analysis engine > annotator. I have downloaded all the required resources by cTAKES 3.1 . I > guess it uses the rxnorm_index as the drug database. But I am not getting > any annotations as the output. Please let me know the correct way using > Drug NER > > Thanks, > > Ravi > > > -- > > Ravi Garg > 4th Year > MSc (hons) Biological Sciences > B.E (hons) Computer Science and Engineering > BITS Pilani KK Birla Goa Campus > -- Ravi Garg 4th Year MSc (hons) Biological Sciences B.E (hons) Computer Science and Engineering BITS Pilani KK Birla Goa Campus
