Ohh Okay, I am sorry Sean, I didn't actually knew Rxnorm is an umls dictionary and you need to have a license to use it. I have got that working but still I dont get any annotations in drugner.type for example RouteAnnotation, DurationAnnotation etc. Any ideas on how to get that working
Thanks, Ravi On Mon, Mar 10, 2014 at 11:56 PM, ravi garg <[email protected]> wrote: > Hey Xiayuan, > > I ensured that the directory of the resource that is the rxnorm_index is > correct and cTAKES is also actually using it. I can see the logs wherein > cTAKES actually parses 16k docs. I get no errors though on using the > pipeline but nothing is extracted or annotated. Even the dosage, frequency > and route which I believe are not dependent on drug dictionary are also not > getting identified. I have worked on the main clinical pipeline before but > am working on the Drug pipeline for the first time so no idea whats wrong. > > Regards, > Ravi > > > On Mon, Mar 10, 2014 at 11:38 PM, Xiayuan Huang <[email protected]>wrote: > >> Hi Ravi, >> >> Currently I am doing one project using cTAKES. I am trying to use a >> pipeline for identifying smoking status, SimulatedProdSmokingTAE.xml. And I >> also encountered some problem on executing those pipelines. Some possible >> errors will be the directory of UIMA resource, you have to set that >> correctly. And I got some exceptions when I try to run pipelines. We can >> discuss how to implement cTAKES later on, I guess I really need someone to >> discuss and help out on this cTAKES system. >> >> Best, >> Xiayuan Huang >> >> >> >> On 2014-03-10 11:05, ravi garg wrote: >> >>> Hey, >>> >>> I am using DrugAggregatePlainTextProcessor.xml as my analysis engine >>> annotator. I have downloaded all the required resources by cTAKES 3.1 >>> . I guess it uses the rxnorm_index as the drug database. But I am not >>> getting any annotations as the output. Please let me know the correct >>> way using Drug NER >>> >>> Thanks, >>> Ravi >>> >>> -- >>> >>> Ravi Garg >>> 4th Year >>> MSc (hons) Biological Sciences >>> B.E (hons) Computer Science and Engineering >>> BITS Pilani KK Birla Goa Campus >>> >> > > > -- > Ravi Garg > 4th Year > MSc (hons) Biological Sciences > B.E (hons) Computer Science and Engineering > BITS Pilani KK Birla Goa Campus > -- Ravi Garg 4th Year MSc (hons) Biological Sciences B.E (hons) Computer Science and Engineering BITS Pilani KK Birla Goa Campus
