Hi Kim, Thank you for your suggestion.
I downloaded apache-ctakes-3.2.0-src folder and copied resources from ctakes-*-res into my resources directory apache-ctakes-3.2.0-src/ctakes-*-res/src/main/resources/org/apache/ctakes/* copied into cTAKES_HOME/resources/org/apache/ctakes folder. I am now able to run CPE with plain text, using 'AggregatePlaintextProcessor' analysis engine. I still get the URI not hierarchical error if I try to run CPE with a CDA, using 'AggregateCdaProcessor' analysis engine. I am not clear on how to copy the resources from files other than ctakes-*-res into my resources directory. Is that required to be able to use 'AggregateCdaProcessor' analysis engine? Thanks and Regards, Susrutha On Wed, Nov 26, 2014 at 12:43 PM, Susrutha Gongalla < [email protected]> wrote: > The original URI not hierarchical error seems to be coming while > initializing a CAS object from the chunker model file. > > 19 Nov 2014 13:39:52 INFO Chunker - Chunker model file: > org/apache/ctakes/chunk > er/models/chunker-model.zip > org.apache.uima.resource.ResourceInitializationException: Initialization > of CAS > Processor with name "AggregateCdaProcessor" failed. > > I am copying the entire log below for your reference. > I will try installing version 3.2.1. Right now I'm working with 3.2.0 > > Meanwhile, I will try the way around suggested by Kim and send an update. > Thank you > > Command Prompt log: > > C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp > "C:\cTAKES_HOME\apache-ctakes-3.2.0/ > > > lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2. > > 0/resources/" > -Dlog4j.configuration=file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con > > fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame > > Nov 19, 2014 1:38:47 PM java.util.prefs.WindowsPreferences <init> > > WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at > root 0 > > x80000002. Windows RegCreateKeyEx(...) returned error code 5. > > log4j: reset attribute= "false". > > log4j: Threshold ="null". > > log4j: Level value for root is [INFO]. > > log4j: root level set to INFO > > log4j: Class name: [org.apache.log4j.ConsoleAppender] > > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" > > log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} > %5p %c{ > > 1} - %m%n]. > > log4j: Adding appender named [consoleAppender] to category [root]. > > 19 Nov 2014 13:39:35 INFO ClearNLPDependencyParserAE - using Morphy > analysis? t > > rue > > Loading configuration. > > Loading feature templates. > > Loading lexica. > > Loading model: > > > ................................................................................ > > ........ > > 19 Nov 2014 13:39:52 INFO TokenizerAnnotatorPTB - Initializing > org.apache.ctake > > s.core.ae.TokenizerAnnotatorPTB > > 19 Nov 2014 13:39:52 INFO ContextDependentTokenizerAnnotator - Finite > state mac > > hines loaded. > > 19 Nov 2014 13:39:52 INFO ContextAnnotator - SCOPE ORDER: [1, 3] > > 19 Nov 2014 13:39:52 INFO NegationContextAnalyzer - initBoundaryData() > called f > > or ContextInitializer > > 19 Nov 2014 13:39:52 INFO ContextAnnotator - SCOPE ORDER: [1, 3] > > 19 Nov 2014 13:39:52 INFO StatusContextAnalyzer - initBoundaryData() > called for > > ContextInitializer > > 19 Nov 2014 13:39:52 INFO SentenceDetector - Sentence detector model > file: org/ > > apache/ctakes/core/sentdetect/sd-med-model.zip > > 19 Nov 2014 13:39:52 INFO POSTagger - POS tagger model file: > org/apache/ctakes/ > > postagger/models/mayo-pos.zip > > 19 Nov 2014 13:39:52 INFO Chunker - Chunker model file: > org/apache/ctakes/chunk > > er/models/chunker-model.zip > > org.apache.uima.resource.ResourceInitializationException: Initialization > of CAS > > Processor with name "AggregateCdaProcessor" failed. > > at > org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi > > alize(CollectionProcessingEngine_impl.java:83) > > at > org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE > > ngine(UIMAFramework_impl.java:420) > > at > org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF > > ramework.java:864) > > at > org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573) > > > > at org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105) > > at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713) > > Caused by: org.apache.uima.resource.ResourceConfigurationException: > Initializati > > on of CAS Processor with name "AggregateCdaProcessor" failed. > > at > org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg > > ratedCasProcessor(CPEFactory.java:1104) > > at > org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces > > sors(CPEFactory.java:550) > > at > org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java > > :253) > > at > org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja > > va:127) > > at > org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi > > alize(CollectionProcessingEngine_impl.java:75) > > ... 5 more > > Caused by: java.lang.IllegalArgumentException: URI is not hierarchical > > at java.io.File.<init>(Unknown Source) > > at > org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImp > > l.java:44) > > at > org.apache.uima.resource.impl.ResourceManager_impl.registerResource(R > > esourceManager_impl.java:603) > > at > org.apache.uima.resource.impl.ResourceManager_impl.initializeExternal > > Resources(ResourceManager_impl.java:442) > > at > org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBa > > se.java:153) > > at > org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initializ > > e(AnalysisEngineImplBase.java:157) > > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini > > tialize(PrimitiveAnalysisEngine_impl.java:123) > > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy > > sisEngineFactory_impl.java:94) > > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co > > mpositeResourceFactory_impl.java:62) > > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > > > > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav > > a:387) > > at > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java > > :254) > > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini > > tASB(AggregateAnalysisEngine_impl.java:431) > > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini > > tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini > > tialize(AggregateAnalysisEngine_impl.java:185) > > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy > > sisEngineFactory_impl.java:94) > > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co > > mpositeResourceFactory_impl.java:62) > > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > > > > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) > > > > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav > > a:425) > > at > org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg > > ratedCasProcessor(CPEFactory.java:1088) > > ... 9 more > > -- > Best Wishes, > Susrutha > > On Wed, Nov 26, 2014 at 1:58 AM, Pei Chen <[email protected]> > wrote: > >> The premise behind the *res.jar's was that you should be able to read the >> models/resources from within a jar which could be deployed to maven >> central. The dependency parser should be able to read the models from the >> -res.jar via InputStream. I believe the only ones that currently require >> physical java.io.File is LVG and Dictionary Lookup. Could you confirm >> which component the original URI is not hierarchical is coming from? We >> can see if we can get that fixed in the next patch... >> >> I'm working on a release candidate 2 for 3.2.1 and should be ready in a >> day or so. If you're willing to give that a shot (I vaguely recall there >> were some fixes to similar issues) >> >> Pei Chen >> Wired Informatics <http://www.wiredinformatics.com> >> 265 Franklin St Ste 1702 >> Boston, MA 02110 >> tel: (617) 433-7544 >> [email protected] >> >> On Tue, Nov 25, 2014 at 3:18 PM, Pei Chen <[email protected]> wrote: >> >> >>> ---------- Forwarded message ---------- >>> From: Kim Ebert <[email protected]> >>> Date: Tue, Nov 25, 2014 at 1:27 PM >>> Subject: Re: cTAKES 3.2.0 CPE error >>> To: Susrutha Gongalla <[email protected]>, >>> [email protected] >>> >>> >>> Hi Susrutha, >>> >>> Sorry for the difficulty on getting things to run here. >>> >>> I have a custom system that packages things for me a bit differently. It >>> appears the default bin release doesn't include all the resources in the >>> the directory. You could download the src folder, and then copy each of the >>> resource directories from the subdirectory of the project into your >>> resource directory. >>> >>> This should get you around any of the errors you were receiving >>> originally, and allow you to have all the resources be accessible. >>> >>> apache-ctakes-3.2.0-src/ctakes-relation-extractor-res/src/main/resources/* >>> -> your resources directory >>> apache-ctakes-3.2.0-src/ctakes-smoking-status/src/main/resources/* -> >>> your resources directory >>> apache-ctakes-3.2.0-src/*/resources/* -> your resources directory >>> >>> Let me know if that works for you. >>> >>> >>> [image: IMAT Solutions] <http://imatsolutions.com> >>> Kim Ebert >>> Software Engineer >>> [image: Office:] 801.669.7342 >>> [email protected] <[email protected]> >>> On 11/25/2014 04:43 AM, Susrutha Gongalla wrote: >>> >>> Hello Kim, >>> >>> Thank you for your response. >>> >>> I have removed the resource jar files suggested by you and tried it out. >>> I am now facing the following error. >>> >>> java.io.FileNotFoundException: org\apache\ctakes\dependency\parser\mo >>> dels\lemmatizer\dictionary-1.3.1.jar (The system cannot find the path >>> specified) >>> >>> Could you please suggest if there is anything else I can try? >>> >>> Given below is the complete log of command prompt: >>> >>> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp >>> "C:\cTAKES_HOME\apache-ctakes-3.2.0/ >>> >>> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2. >>> 0/resources/" -Dlog4j.configuration= >>> file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con >>> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame >>> Nov 25, 2014 4:04:03 PM java.util.prefs.WindowsPreferences <init> >>> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs >>> at root 0 >>> x80000002. Windows RegCreateKeyEx(...) returned error code 5. >>> log4j: reset attribute= "false". >>> log4j: Threshold ="null". >>> log4j: Level value for root is [INFO]. >>> log4j: root level set to INFO >>> log4j: Class name: [org.apache.log4j.ConsoleAppender] >>> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" >>> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} >>> %5p %c{ >>> 1} - %m%n]. >>> log4j: Adding appender named [consoleAppender] to category [root]. >>> 25 Nov 2014 16:05:42 INFO ClearNLPDependencyParserAE - using Morphy >>> analysis? t >>> rue >>> org.apache.uima.resource.ResourceInitializationException: Initialization >>> of CAS >>> Processor with name "AggregateCdaProcessor" failed. >>> at >>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >>> alize(CollectionProcessingEngine_impl.java:83) >>> at >>> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE >>> ngine(UIMAFramework_impl.java:420) >>> at >>> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF >>> ramework.java:864) >>> at >>> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573) >>> >>> at >>> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105) >>> at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713) >>> Caused by: org.apache.uima.resource.ResourceConfigurationException: >>> Initializati >>> on of CAS Processor with name "AggregateCdaProcessor" failed. >>> at >>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >>> ratedCasProcessor(CPEFactory.java:1104) >>> at >>> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces >>> sors(CPEFactory.java:550) >>> at >>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java >>> :253) >>> at >>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja >>> va:127) >>> at >>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >>> alize(CollectionProcessingEngine_impl.java:75) >>> ... 5 more >>> Caused by: org.apache.uima.resource.ResourceInitializationException: >>> Initializat >>> ion of annotator class >>> "org.apache.ctakes.dependency.parser.ae.ClearNLPDependenc >>> yParserAE" failed. (Descriptor: >>> file:/C:/cTAKES_HOME/apache-ctakes-3.2.0/desc/c >>> >>> takes-dependency-parser/desc/analysis_engine/ClearNLPDependencyParserAE.xml) >>> at >>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini >>> tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) >>> at >>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini >>> tialize(PrimitiveAnalysisEngine_impl.java:156) >>> at >>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >>> sisEngineFactory_impl.java:94) >>> at >>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >>> mpositeResourceFactory_impl.java:62) >>> at >>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>> >>> at >>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >>> a:387) >>> at >>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java >>> :254) >>> at >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>> tASB(AggregateAnalysisEngine_impl.java:431) >>> at >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >>> at >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>> tialize(AggregateAnalysisEngine_impl.java:185) >>> at >>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >>> sisEngineFactory_impl.java:94) >>> at >>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >>> mpositeResourceFactory_impl.java:62) >>> at >>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>> >>> at >>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) >>> >>> at >>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >>> a:425) >>> at >>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >>> ratedCasProcessor(CPEFactory.java:1088) >>> ... 9 more >>> Caused by: org.apache.uima.resource.ResourceInitializationException >>> at >>> org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE.ini >>> tialize(ClearNLPDependencyParserAE.java:138) >>> at >>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini >>> tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) >>> ... 24 more >>> Caused by: java.io.FileNotFoundException: >>> org\apache\ctakes\dependency\parser\mo >>> dels\lemmatizer\dictionary-1.3.1.jar (The system cannot find the path >>> specified) >>> >>> at java.io.FileInputStream.open(Native Method) >>> at java.io.FileInputStream.<init>(Unknown Source) >>> at >>> org.apache.ctakes.core.resource.FileLocator.getAsStream(FileLocator.j >>> ava:50) >>> at >>> org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE.ini >>> tialize(ClearNLPDependencyParserAE.java:125) >>> ... 25 more >>> >>> Thank you in advance. >>> >>> Regards, >>> Susrutha >>> >>> On Wed, Nov 19, 2014 at 9:04 PM, Kim Ebert < >>> [email protected]> wrote: >>> >>>> Susrutha, >>>> >>>> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical >>>> >>>> I believe this is caused in some versions by having the resources in >>>> jar files. I found it effective to remove the resource jar files and rely >>>> upon the resources directory. So ctakes*-res-*.jar >>>> >>>> Let me know if that helps. >>>> >>>> Thanks, >>>> >>>> [image: IMAT Solutions] <http://imatsolutions.com> >>>> Kim Ebert >>>> Software Engineer >>>> [image: Office:] 801.669.7342 >>>> [email protected] <[email protected]> >>>> On 11/19/2014 03:44 AM, Susrutha Gongalla wrote: >>>> >>>> Hi, >>>> >>>> I have installed cTAKES 3.2.0 along with corresponding resources as >>>> per the instructions given on Apache website. >>>> >>>> I get the following error when I run the runctakescpe.bat file >>>> >>>> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp >>>> "C:\cTAKES_HOME\apache-ctakes-3.2.0/ >>>> >>>> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2. >>>> 0/resources/" -Dlog4j.configuration= >>>> file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con >>>> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame >>>> Nov 19, 2014 1:38:47 PM java.util.prefs.WindowsPreferences <init> >>>> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs >>>> at root 0 >>>> x80000002. Windows RegCreateKeyEx(...) returned error code 5. >>>> >>>> If I ignore this error and try to run the pipeline using test1.xml >>>> CPE descriptor (example given in the installation guide), >>>> I get an error caused due to java.lang.IllegalArgumentException >>>> >>>> Given below is the cmd output: >>>> >>>> log4j: reset attribute= "false". >>>> log4j: Threshold ="null". >>>> log4j: Level value for root is [INFO]. >>>> log4j: root level set to INFO >>>> log4j: Class name: [org.apache.log4j.ConsoleAppender] >>>> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" >>>> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy >>>> HH:mm:ss} %5p %c{ >>>> 1} - %m%n]. >>>> log4j: Adding appender named [consoleAppender] to category [root]. >>>> 19 Nov 2014 13:39:35 INFO ClearNLPDependencyParserAE - using Morphy >>>> analysis? t >>>> rue >>>> Loading configuration. >>>> Loading feature templates. >>>> Loading lexica. >>>> Loading model: >>>> >>>> ................................................................................ >>>> ........ >>>> 19 Nov 2014 13:39:52 INFO TokenizerAnnotatorPTB - Initializing >>>> org.apache.ctake >>>> s.core.ae.TokenizerAnnotatorPTB >>>> 19 Nov 2014 13:39:52 INFO ContextDependentTokenizerAnnotator - Finite >>>> state mac >>>> hines loaded. >>>> 19 Nov 2014 13:39:52 INFO ContextAnnotator - SCOPE ORDER: [1, 3] >>>> 19 Nov 2014 13:39:52 INFO NegationContextAnalyzer - initBoundaryData() >>>> called f >>>> or ContextInitializer >>>> 19 Nov 2014 13:39:52 INFO ContextAnnotator - SCOPE ORDER: [1, 3] >>>> 19 Nov 2014 13:39:52 INFO StatusContextAnalyzer - initBoundaryData() >>>> called for >>>> ContextInitializer >>>> 19 Nov 2014 13:39:52 INFO SentenceDetector - Sentence detector model >>>> file: org/ >>>> apache/ctakes/core/sentdetect/sd-med-model.zip >>>> 19 Nov 2014 13:39:52 INFO POSTagger - POS tagger model file: >>>> org/apache/ctakes/ >>>> postagger/models/mayo-pos.zip >>>> 19 Nov 2014 13:39:52 INFO Chunker - Chunker model file: >>>> org/apache/ctakes/chunk >>>> er/models/chunker-model.zip >>>> org.apache.uima.resource.ResourceInitializationException: >>>> Initialization of CAS >>>> Processor with name "AggregateCdaProcessor" failed. >>>> at >>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >>>> alize(CollectionProcessingEngine_impl.java:83) >>>> at >>>> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE >>>> ngine(UIMAFramework_impl.java:420) >>>> at >>>> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF >>>> ramework.java:864) >>>> at >>>> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573) >>>> >>>> at >>>> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105) >>>> at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713) >>>> Caused by: org.apache.uima.resource.ResourceConfigurationException: >>>> Initializati >>>> on of CAS Processor with name "AggregateCdaProcessor" failed. >>>> at >>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >>>> ratedCasProcessor(CPEFactory.java:1104) >>>> at >>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces >>>> sors(CPEFactory.java:550) >>>> at >>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java >>>> :253) >>>> at >>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja >>>> va:127) >>>> at >>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >>>> alize(CollectionProcessingEngine_impl.java:75) >>>> ... 5 more >>>> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical >>>> at java.io.File.<init>(Unknown Source) >>>> at >>>> org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImp >>>> l.java:44) >>>> at >>>> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(R >>>> esourceManager_impl.java:603) >>>> at >>>> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternal >>>> Resources(ResourceManager_impl.java:442) >>>> at >>>> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBa >>>> se.java:153) >>>> at >>>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initializ >>>> e(AnalysisEngineImplBase.java:157) >>>> at >>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini >>>> tialize(PrimitiveAnalysisEngine_impl.java:123) >>>> at >>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >>>> sisEngineFactory_impl.java:94) >>>> at >>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >>>> mpositeResourceFactory_impl.java:62) >>>> at >>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>>> >>>> at >>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >>>> a:387) >>>> at >>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java >>>> :254) >>>> at >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>>> tASB(AggregateAnalysisEngine_impl.java:431) >>>> at >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>>> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >>>> at >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>>> tialize(AggregateAnalysisEngine_impl.java:185) >>>> at >>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >>>> sisEngineFactory_impl.java:94) >>>> at >>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >>>> mpositeResourceFactory_impl.java:62) >>>> at >>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>>> >>>> at >>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) >>>> >>>> at >>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >>>> a:425) >>>> at >>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >>>> ratedCasProcessor(CPEFactory.java:1088) >>>> ... 9 more >>>> >>>> >>>> I have followed everything as per the user installation guide. >>>> Can somebody please throw some light on what might be causing this >>>> error? >>>> I would greatly appreciate any help in this regard! >>>> >>>> Thanks and Regards, >>>> Susrutha Gongalla >>>> >>>> >>>> >>> >>> >>> >> >
