Susrutha, While this will temp work in a single CPE/CVD, it's not recommended once you move to a distributed system such as hadoop or similar. The rationale behind this architecture was intentional; and we should definitely fix any bugs if exists.
References: https://issues.apache.org/jira/browse/CTAKES-183 http://mail-archives.apache.org/mod_mbox/ctakes-dev/201303.mbox/%3C996FC801C05DF64A84246A106FACACD00F3A22%40MSGPEXCHA08A.mfad.mfroot.org%3E https://issues.apache.org/jira/browse/CTAKES-320 On Thu, Nov 27, 2014 at 7:24 AM, Susrutha Gongalla < [email protected]> wrote: > Hi Kim, > > Thank you for your suggestion. > > I downloaded apache-ctakes-3.2.0-src folder and copied resources from > ctakes-*-res into my resources directory > > apache-ctakes-3.2.0-src/ctakes-*-res/src/main/resources/org/apache/ctakes/* > copied into cTAKES_HOME/resources/org/apache/ctakes folder. > > I am now able to run CPE with plain text, using > 'AggregatePlaintextProcessor' analysis engine. > I still get the URI not hierarchical error if I try to run CPE with a CDA, > using 'AggregateCdaProcessor' analysis engine. > > I am not clear on how to copy the resources from files other than ctakes-*-res > into my resources directory. > Is that required to be able to use 'AggregateCdaProcessor' analysis > engine? > > Thanks and Regards, > Susrutha > > > On Wed, Nov 26, 2014 at 12:43 PM, Susrutha Gongalla < > [email protected]> wrote: > >> The original URI not hierarchical error seems to be coming while >> initializing a CAS object from the chunker model file. >> >> 19 Nov 2014 13:39:52 INFO Chunker - Chunker model file: >> org/apache/ctakes/chunk >> er/models/chunker-model.zip >> org.apache.uima.resource.ResourceInitializationException: Initialization >> of CAS >> Processor with name "AggregateCdaProcessor" failed. >> >> I am copying the entire log below for your reference. >> I will try installing version 3.2.1. Right now I'm working with 3.2.0 >> >> Meanwhile, I will try the way around suggested by Kim and send an update. >> Thank you >> >> Command Prompt log: >> >> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp >> "C:\cTAKES_HOME\apache-ctakes-3.2.0/ >> >> >> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2. >> >> 0/resources/" >> -Dlog4j.configuration=file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con >> >> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame >> >> Nov 19, 2014 1:38:47 PM java.util.prefs.WindowsPreferences <init> >> >> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at >> root 0 >> >> x80000002. Windows RegCreateKeyEx(...) returned error code 5. >> >> log4j: reset attribute= "false". >> >> log4j: Threshold ="null". >> >> log4j: Level value for root is [INFO]. >> >> log4j: root level set to INFO >> >> log4j: Class name: [org.apache.log4j.ConsoleAppender] >> >> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" >> >> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} >> %5p %c{ >> >> 1} - %m%n]. >> >> log4j: Adding appender named [consoleAppender] to category [root]. >> >> 19 Nov 2014 13:39:35 INFO ClearNLPDependencyParserAE - using Morphy >> analysis? t >> >> rue >> >> Loading configuration. >> >> Loading feature templates. >> >> Loading lexica. >> >> Loading model: >> >> >> ................................................................................ >> >> ........ >> >> 19 Nov 2014 13:39:52 INFO TokenizerAnnotatorPTB - Initializing >> org.apache.ctake >> >> s.core.ae.TokenizerAnnotatorPTB >> >> 19 Nov 2014 13:39:52 INFO ContextDependentTokenizerAnnotator - Finite >> state mac >> >> hines loaded. >> >> 19 Nov 2014 13:39:52 INFO ContextAnnotator - SCOPE ORDER: [1, 3] >> >> 19 Nov 2014 13:39:52 INFO NegationContextAnalyzer - initBoundaryData() >> called f >> >> or ContextInitializer >> >> 19 Nov 2014 13:39:52 INFO ContextAnnotator - SCOPE ORDER: [1, 3] >> >> 19 Nov 2014 13:39:52 INFO StatusContextAnalyzer - initBoundaryData() >> called for >> >> ContextInitializer >> >> 19 Nov 2014 13:39:52 INFO SentenceDetector - Sentence detector model >> file: org/ >> >> apache/ctakes/core/sentdetect/sd-med-model.zip >> >> 19 Nov 2014 13:39:52 INFO POSTagger - POS tagger model file: >> org/apache/ctakes/ >> >> postagger/models/mayo-pos.zip >> >> 19 Nov 2014 13:39:52 INFO Chunker - Chunker model file: >> org/apache/ctakes/chunk >> >> er/models/chunker-model.zip >> >> org.apache.uima.resource.ResourceInitializationException: Initialization >> of CAS >> >> Processor with name "AggregateCdaProcessor" failed. >> >> at >> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >> >> alize(CollectionProcessingEngine_impl.java:83) >> >> at >> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE >> >> ngine(UIMAFramework_impl.java:420) >> >> at >> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF >> >> ramework.java:864) >> >> at >> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573) >> >> >> >> at >> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105) >> >> at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713) >> >> Caused by: org.apache.uima.resource.ResourceConfigurationException: >> Initializati >> >> on of CAS Processor with name "AggregateCdaProcessor" failed. >> >> at >> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >> >> ratedCasProcessor(CPEFactory.java:1104) >> >> at >> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces >> >> sors(CPEFactory.java:550) >> >> at >> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java >> >> :253) >> >> at >> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja >> >> va:127) >> >> at >> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >> >> alize(CollectionProcessingEngine_impl.java:75) >> >> ... 5 more >> >> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical >> >> at java.io.File.<init>(Unknown Source) >> >> at >> org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImp >> >> l.java:44) >> >> at >> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(R >> >> esourceManager_impl.java:603) >> >> at >> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternal >> >> Resources(ResourceManager_impl.java:442) >> >> at >> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBa >> >> se.java:153) >> >> at >> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initializ >> >> e(AnalysisEngineImplBase.java:157) >> >> at >> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini >> >> tialize(PrimitiveAnalysisEngine_impl.java:123) >> >> at >> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >> >> sisEngineFactory_impl.java:94) >> >> at >> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >> >> mpositeResourceFactory_impl.java:62) >> >> at >> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> >> >> >> at >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >> >> a:387) >> >> at >> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java >> >> :254) >> >> at >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >> >> tASB(AggregateAnalysisEngine_impl.java:431) >> >> at >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >> >> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >> >> at >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >> >> tialize(AggregateAnalysisEngine_impl.java:185) >> >> at >> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >> >> sisEngineFactory_impl.java:94) >> >> at >> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >> >> mpositeResourceFactory_impl.java:62) >> >> at >> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> >> >> >> at >> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) >> >> >> >> at >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >> >> a:425) >> >> at >> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >> >> ratedCasProcessor(CPEFactory.java:1088) >> >> ... 9 more >> >> -- >> Best Wishes, >> Susrutha >> >> On Wed, Nov 26, 2014 at 1:58 AM, Pei Chen <[email protected]> >> wrote: >> >>> The premise behind the *res.jar's was that you should be able to read >>> the models/resources from within a jar which could be deployed to maven >>> central. The dependency parser should be able to read the models from the >>> -res.jar via InputStream. I believe the only ones that currently require >>> physical java.io.File is LVG and Dictionary Lookup. Could you confirm >>> which component the original URI is not hierarchical is coming from? >>> We can see if we can get that fixed in the next patch... >>> >>> I'm working on a release candidate 2 for 3.2.1 and should be ready in a >>> day or so. If you're willing to give that a shot (I vaguely recall there >>> were some fixes to similar issues) >>> >>> Pei Chen >>> Wired Informatics <http://www.wiredinformatics.com> >>> 265 Franklin St Ste 1702 >>> Boston, MA 02110 >>> tel: (617) 433-7544 >>> [email protected] >>> >>> On Tue, Nov 25, 2014 at 3:18 PM, Pei Chen <[email protected]> wrote: >>> >>> >>>> ---------- Forwarded message ---------- >>>> From: Kim Ebert <[email protected]> >>>> Date: Tue, Nov 25, 2014 at 1:27 PM >>>> Subject: Re: cTAKES 3.2.0 CPE error >>>> To: Susrutha Gongalla <[email protected]>, >>>> [email protected] >>>> >>>> >>>> Hi Susrutha, >>>> >>>> Sorry for the difficulty on getting things to run here. >>>> >>>> I have a custom system that packages things for me a bit differently. >>>> It appears the default bin release doesn't include all the resources in the >>>> the directory. You could download the src folder, and then copy each of the >>>> resource directories from the subdirectory of the project into your >>>> resource directory. >>>> >>>> This should get you around any of the errors you were receiving >>>> originally, and allow you to have all the resources be accessible. >>>> >>>> apache-ctakes-3.2.0-src/ctakes-relation-extractor-res/src/main/resources/* >>>> -> your resources directory >>>> apache-ctakes-3.2.0-src/ctakes-smoking-status/src/main/resources/* -> >>>> your resources directory >>>> apache-ctakes-3.2.0-src/*/resources/* -> your resources directory >>>> >>>> Let me know if that works for you. >>>> >>>> >>>> [image: IMAT Solutions] <http://imatsolutions.com> >>>> Kim Ebert >>>> Software Engineer >>>> [image: Office:] 801.669.7342 >>>> [email protected] <[email protected]> >>>> On 11/25/2014 04:43 AM, Susrutha Gongalla wrote: >>>> >>>> Hello Kim, >>>> >>>> Thank you for your response. >>>> >>>> I have removed the resource jar files suggested by you and tried it out. >>>> I am now facing the following error. >>>> >>>> java.io.FileNotFoundException: org\apache\ctakes\dependency\parser\mo >>>> dels\lemmatizer\dictionary-1.3.1.jar (The system cannot find the path >>>> specified) >>>> >>>> Could you please suggest if there is anything else I can try? >>>> >>>> Given below is the complete log of command prompt: >>>> >>>> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp >>>> "C:\cTAKES_HOME\apache-ctakes-3.2.0/ >>>> >>>> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2. >>>> 0/resources/" -Dlog4j.configuration= >>>> file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con >>>> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame >>>> Nov 25, 2014 4:04:03 PM java.util.prefs.WindowsPreferences <init> >>>> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs >>>> at root 0 >>>> x80000002. Windows RegCreateKeyEx(...) returned error code 5. >>>> log4j: reset attribute= "false". >>>> log4j: Threshold ="null". >>>> log4j: Level value for root is [INFO]. >>>> log4j: root level set to INFO >>>> log4j: Class name: [org.apache.log4j.ConsoleAppender] >>>> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" >>>> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy >>>> HH:mm:ss} %5p %c{ >>>> 1} - %m%n]. >>>> log4j: Adding appender named [consoleAppender] to category [root]. >>>> 25 Nov 2014 16:05:42 INFO ClearNLPDependencyParserAE - using Morphy >>>> analysis? t >>>> rue >>>> org.apache.uima.resource.ResourceInitializationException: >>>> Initialization of CAS >>>> Processor with name "AggregateCdaProcessor" failed. >>>> at >>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >>>> alize(CollectionProcessingEngine_impl.java:83) >>>> at >>>> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE >>>> ngine(UIMAFramework_impl.java:420) >>>> at >>>> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF >>>> ramework.java:864) >>>> at >>>> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573) >>>> >>>> at >>>> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105) >>>> at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713) >>>> Caused by: org.apache.uima.resource.ResourceConfigurationException: >>>> Initializati >>>> on of CAS Processor with name "AggregateCdaProcessor" failed. >>>> at >>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >>>> ratedCasProcessor(CPEFactory.java:1104) >>>> at >>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces >>>> sors(CPEFactory.java:550) >>>> at >>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java >>>> :253) >>>> at >>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja >>>> va:127) >>>> at >>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >>>> alize(CollectionProcessingEngine_impl.java:75) >>>> ... 5 more >>>> Caused by: org.apache.uima.resource.ResourceInitializationException: >>>> Initializat >>>> ion of annotator class >>>> "org.apache.ctakes.dependency.parser.ae.ClearNLPDependenc >>>> yParserAE" failed. (Descriptor: >>>> file:/C:/cTAKES_HOME/apache-ctakes-3.2.0/desc/c >>>> >>>> takes-dependency-parser/desc/analysis_engine/ClearNLPDependencyParserAE.xml) >>>> at >>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini >>>> tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) >>>> at >>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini >>>> tialize(PrimitiveAnalysisEngine_impl.java:156) >>>> at >>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >>>> sisEngineFactory_impl.java:94) >>>> at >>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >>>> mpositeResourceFactory_impl.java:62) >>>> at >>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>>> >>>> at >>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >>>> a:387) >>>> at >>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java >>>> :254) >>>> at >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>>> tASB(AggregateAnalysisEngine_impl.java:431) >>>> at >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>>> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >>>> at >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>>> tialize(AggregateAnalysisEngine_impl.java:185) >>>> at >>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >>>> sisEngineFactory_impl.java:94) >>>> at >>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >>>> mpositeResourceFactory_impl.java:62) >>>> at >>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>>> >>>> at >>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) >>>> >>>> at >>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >>>> a:425) >>>> at >>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >>>> ratedCasProcessor(CPEFactory.java:1088) >>>> ... 9 more >>>> Caused by: org.apache.uima.resource.ResourceInitializationException >>>> at >>>> org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE.ini >>>> tialize(ClearNLPDependencyParserAE.java:138) >>>> at >>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini >>>> tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) >>>> ... 24 more >>>> Caused by: java.io.FileNotFoundException: >>>> org\apache\ctakes\dependency\parser\mo >>>> dels\lemmatizer\dictionary-1.3.1.jar (The system cannot find the path >>>> specified) >>>> >>>> at java.io.FileInputStream.open(Native Method) >>>> at java.io.FileInputStream.<init>(Unknown Source) >>>> at >>>> org.apache.ctakes.core.resource.FileLocator.getAsStream(FileLocator.j >>>> ava:50) >>>> at >>>> org.apache.ctakes.dependency.parser.ae.ClearNLPDependencyParserAE.ini >>>> tialize(ClearNLPDependencyParserAE.java:125) >>>> ... 25 more >>>> >>>> Thank you in advance. >>>> >>>> Regards, >>>> Susrutha >>>> >>>> On Wed, Nov 19, 2014 at 9:04 PM, Kim Ebert < >>>> [email protected]> wrote: >>>> >>>>> Susrutha, >>>>> >>>>> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical >>>>> >>>>> I believe this is caused in some versions by having the resources in >>>>> jar files. I found it effective to remove the resource jar files and rely >>>>> upon the resources directory. So ctakes*-res-*.jar >>>>> >>>>> Let me know if that helps. >>>>> >>>>> Thanks, >>>>> >>>>> [image: IMAT Solutions] <http://imatsolutions.com> >>>>> Kim Ebert >>>>> Software Engineer >>>>> [image: Office:] 801.669.7342 >>>>> [email protected] <[email protected]> >>>>> On 11/19/2014 03:44 AM, Susrutha Gongalla wrote: >>>>> >>>>> Hi, >>>>> >>>>> I have installed cTAKES 3.2.0 along with corresponding resources as >>>>> per the instructions given on Apache website. >>>>> >>>>> I get the following error when I run the runctakescpe.bat file >>>>> >>>>> C:\cTAKES_HOME\apache-ctakes-3.2.0>java -cp >>>>> "C:\cTAKES_HOME\apache-ctakes-3.2.0/ >>>>> >>>>> lib/*;C:\cTAKES_HOME\apache-ctakes-3.2.0/desc/;C:\cTAKES_HOME\apache-ctakes-3.2. >>>>> 0/resources/" -Dlog4j.configuration= >>>>> file:/C:\cTAKES_HOME\apache-ctakes-3.2.0/con >>>>> fig/log4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cpm.CpmFrame >>>>> Nov 19, 2014 1:38:47 PM java.util.prefs.WindowsPreferences <init> >>>>> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs >>>>> at root 0 >>>>> x80000002. Windows RegCreateKeyEx(...) returned error code 5. >>>>> >>>>> If I ignore this error and try to run the pipeline using test1.xml >>>>> CPE descriptor (example given in the installation guide), >>>>> I get an error caused due to java.lang.IllegalArgumentException >>>>> >>>>> Given below is the cmd output: >>>>> >>>>> log4j: reset attribute= "false". >>>>> log4j: Threshold ="null". >>>>> log4j: Level value for root is [INFO]. >>>>> log4j: root level set to INFO >>>>> log4j: Class name: [org.apache.log4j.ConsoleAppender] >>>>> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" >>>>> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy >>>>> HH:mm:ss} %5p %c{ >>>>> 1} - %m%n]. >>>>> log4j: Adding appender named [consoleAppender] to category [root]. >>>>> 19 Nov 2014 13:39:35 INFO ClearNLPDependencyParserAE - using Morphy >>>>> analysis? t >>>>> rue >>>>> Loading configuration. >>>>> Loading feature templates. >>>>> Loading lexica. >>>>> Loading model: >>>>> >>>>> ................................................................................ >>>>> ........ >>>>> 19 Nov 2014 13:39:52 INFO TokenizerAnnotatorPTB - Initializing >>>>> org.apache.ctake >>>>> s.core.ae.TokenizerAnnotatorPTB >>>>> 19 Nov 2014 13:39:52 INFO ContextDependentTokenizerAnnotator - Finite >>>>> state mac >>>>> hines loaded. >>>>> 19 Nov 2014 13:39:52 INFO ContextAnnotator - SCOPE ORDER: [1, 3] >>>>> 19 Nov 2014 13:39:52 INFO NegationContextAnalyzer - >>>>> initBoundaryData() called f >>>>> or ContextInitializer >>>>> 19 Nov 2014 13:39:52 INFO ContextAnnotator - SCOPE ORDER: [1, 3] >>>>> 19 Nov 2014 13:39:52 INFO StatusContextAnalyzer - initBoundaryData() >>>>> called for >>>>> ContextInitializer >>>>> 19 Nov 2014 13:39:52 INFO SentenceDetector - Sentence detector model >>>>> file: org/ >>>>> apache/ctakes/core/sentdetect/sd-med-model.zip >>>>> 19 Nov 2014 13:39:52 INFO POSTagger - POS tagger model file: >>>>> org/apache/ctakes/ >>>>> postagger/models/mayo-pos.zip >>>>> 19 Nov 2014 13:39:52 INFO Chunker - Chunker model file: >>>>> org/apache/ctakes/chunk >>>>> er/models/chunker-model.zip >>>>> org.apache.uima.resource.ResourceInitializationException: >>>>> Initialization of CAS >>>>> Processor with name "AggregateCdaProcessor" failed. >>>>> at >>>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >>>>> alize(CollectionProcessingEngine_impl.java:83) >>>>> at >>>>> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingE >>>>> ngine(UIMAFramework_impl.java:420) >>>>> at >>>>> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAF >>>>> ramework.java:864) >>>>> at >>>>> org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573) >>>>> >>>>> at >>>>> org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105) >>>>> at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713) >>>>> Caused by: org.apache.uima.resource.ResourceConfigurationException: >>>>> Initializati >>>>> on of CAS Processor with name "AggregateCdaProcessor" failed. >>>>> at >>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >>>>> ratedCasProcessor(CPEFactory.java:1104) >>>>> at >>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProces >>>>> sors(CPEFactory.java:550) >>>>> at >>>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java >>>>> :253) >>>>> at >>>>> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.ja >>>>> va:127) >>>>> at >>>>> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initi >>>>> alize(CollectionProcessingEngine_impl.java:75) >>>>> ... 5 more >>>>> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical >>>>> at java.io.File.<init>(Unknown Source) >>>>> at >>>>> org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImp >>>>> l.java:44) >>>>> at >>>>> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(R >>>>> esourceManager_impl.java:603) >>>>> at >>>>> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternal >>>>> Resources(ResourceManager_impl.java:442) >>>>> at >>>>> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBa >>>>> se.java:153) >>>>> at >>>>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initializ >>>>> e(AnalysisEngineImplBase.java:157) >>>>> at >>>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini >>>>> tialize(PrimitiveAnalysisEngine_impl.java:123) >>>>> at >>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >>>>> sisEngineFactory_impl.java:94) >>>>> at >>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >>>>> mpositeResourceFactory_impl.java:62) >>>>> at >>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>>>> >>>>> at >>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >>>>> a:387) >>>>> at >>>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java >>>>> :254) >>>>> at >>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>>>> tASB(AggregateAnalysisEngine_impl.java:431) >>>>> at >>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>>>> tializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >>>>> at >>>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.ini >>>>> tialize(AggregateAnalysisEngine_impl.java:185) >>>>> at >>>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Analy >>>>> sisEngineFactory_impl.java:94) >>>>> at >>>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(Co >>>>> mpositeResourceFactory_impl.java:62) >>>>> at >>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>>>> >>>>> at >>>>> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) >>>>> >>>>> at >>>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.jav >>>>> a:425) >>>>> at >>>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceInteg >>>>> ratedCasProcessor(CPEFactory.java:1088) >>>>> ... 9 more >>>>> >>>>> >>>>> I have followed everything as per the user installation guide. >>>>> Can somebody please throw some light on what might be causing this >>>>> error? >>>>> I would greatly appreciate any help in this regard! >>>>> >>>>> Thanks and Regards, >>>>> Susrutha Gongalla >>>>> >>>>> >>>>> >>>> >>>> >>>> >>> >> >
