Thanks, Pei. I was able to get it working by including the org.apache.ctakes/ctakes-drug-ner library in my project. But the accuracy isn't anywhere near where I would need it to be, so I'm looking at other options. Has anyone tried integrating MedXN with cTAKES? MedXN performs extremely well on the handful of test medical notes that I ran it on.
Thanks, Dave On Wed, Dec 31, 2014 at 10:13 AM, Pei Chen <[email protected]> wrote: > Dave, > There was a related email one [1]. > Essentially, you shouldn't need a secondary/redundant lookup window and > dictionary. It should just iterate through all of the Medications > previously identified by the Dictionary Lookup Component. > See sample config [2] in how to add that to your existing pipeline. Let > us know if that works for you. > > [1] > http://mail-archives.apache.org/mod_mbox/ctakes-dev/201412.mbox/%3c924de05c19409b438eb81de683a942d916db2...@chexmbx1a.chboston.org%3e > [2] > https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml > > On Fri, Dec 26, 2014 at 10:47 PM, David Kincaid <[email protected]> > wrote: > >> Is the ctakes-drug-ner AE supposed to be working in the newest versions >> of cTakes (3.2.x)? I'm getting the following error and confirm that that >> TypeSystem.xml doesn't exist anywhere. >> >> Has ctakes-drug-ner been supersceded by something else? >> >> >> InvalidXMLException An import could not be resolved. No .xml file with >> name "org.apache.ctakes.drugner.types.TypeSystem" was found in the class >> path or data path. (Descriptor: >> file:/home/davek/apps/apache-ctakes-3.2.1/desc/ctakes-drug-ner/desc/analysis_engine/DrugCNP2LookupWindow.xml) >> >> >> Thanks, >> >> Dave >> > >
