I just tried this test_plaintext.xml file as the CPE descriptor with the sample file placed in the testdata folder mentioned in the tutorial and (set the input directory in the GUI to the testdata folder): https://svn.apache.org/repos/asf/ctakes/branches/ctakes-3.1.0/ctakes-clinical-pipeline/src/test/data/testpatient_cn_1.xml
The Error window I am getting states "org.apache.uima.cas.CASRuntimeException: Jcas type "org.apache.ctakes.typesystem.type.structured.DocumentID" used in Java code, but was not declared in the XML type descriptor. So still no luck, do you have any other suggestions? Tol On Wed, Jan 28, 2015 at 1:42 PM, britt fitch < [email protected]> wrote: > Hi Tol, you might prefer to try the test_plaintext.xml CPE instead of the > CDA one: > > http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-clinical-pipeline/desc/collection_processing_engine/test_plaintext.xml > > > Cheers, > > Britt > > Britt Fitch > Wired Informatics > 265 Franklin St Ste 1702 > Boston, MA 02110 > http://wiredinformatics.com > [email protected] > > On Jan 28, 2015, at 2:25 PM, Tol O. <[email protected]> wrote: > > Hi, > > I am following the cTAKES 3.2 User Install Guide with cTAKES 3.2.1 using > Linux and Java 8. > > At step 8 of the Collection Processing Engine (CPE) (click the play > button) I am get an error message: > "org.apache.uima.resource.ResourceInitializationException: Initialization > of CAS Processor with name "AggregateCdaProcessor" failed. [...] Caused by: > java.lang.IllegalArgumentException: URI is not hierarchical." > > I read a bit on this mailing list and saw that other people also > encountered such or a similar error. I followed the install guide step by > step and extracted/copied the cTAKES resources folder over the already > existing resources folder of cTAKES. > > Does anybody know how to fix this Exception problem to run the Collection > Processing Engine (CPE)? > > Many thanks! > > >
