Hi Pei, Thank you for your response. I added the imports to the CdaCasInitializer descriptor but I am still getting the same error as follows,
[image: Inline image 1] There might be something going wrong with "AggregateCdaProcessor". Thank you, Vivian On Thu, Jan 29, 2015 at 9:37 AM, Pei Chen <[email protected]> wrote: > Try adding the below to the earliest defined primitive descriptor? [1][2] > > <typeSystemDescription> > > <imports> > > <import name="org.apache.ctakes.typesystem.types.TypeSystem"/> > > </imports> > > </typeSystemDescription> > > > > Normally I think this is already added in SegementAnnotator… Feel free to > create a Jira (steps to replicate the issue, and where you placed the fix > so it can be addressed in the next patch). > > Side note: I think we should DELETE all existing xml Descriptors (very > difficult to maintain and test all combinations). And recreate only the > necessary ones via uimaFIT. > > > > [1] > http://mail-archives.apache.org/mod_mbox/ctakes-user/201311.mbox/%[email protected]%3E > > [2] > http://mail-archives.apache.org/mod_mbox/ctakes-user/201403.mbox/%3CCAPqz87oUZ=hpzc_fo_zlaef3pvqcm9xsyums15iymgapsxx...@mail.gmail.com%3E > > On Wed, Jan 28, 2015 at 3:46 PM, Weiwei Zhang <[email protected]> > wrote: > >> Hello there, >> >> I encountered the same error as Tol when running CPE in Apache cTakes. >> >> Thank you, >> Vivian >> >> On Wed, Jan 28, 2015 at 12:04 PM, Tol O. <[email protected]> wrote: >> >>> I just tried this test_plaintext.xml file as the CPE descriptor with the >>> sample file placed in the testdata folder mentioned in the tutorial and >>> (set the input directory in the GUI to the testdata folder): >>> >>> https://svn.apache.org/repos/asf/ctakes/branches/ctakes-3.1.0/ctakes-clinical-pipeline/src/test/data/testpatient_cn_1.xml >>> >>> The Error window I am getting states >>> "org.apache.uima.cas.CASRuntimeException: Jcas type >>> "org.apache.ctakes.typesystem.type.structured.DocumentID" used in Java >>> code, but was not declared in the XML type descriptor. >>> >>> So still no luck, do you have any other suggestions? >>> >>> Tol >>> >>> >>> >>> >>> >>> On Wed, Jan 28, 2015 at 1:42 PM, britt fitch < >>> [email protected]> wrote: >>> >>>> Hi Tol, you might prefer to try the test_plaintext.xml CPE instead of >>>> the CDA one: >>>> >>>> http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-clinical-pipeline/desc/collection_processing_engine/test_plaintext.xml >>>> >>>> >>>> Cheers, >>>> >>>> Britt >>>> >>>> Britt Fitch >>>> Wired Informatics >>>> 265 Franklin St Ste 1702 >>>> Boston, MA 02110 >>>> http://wiredinformatics.com >>>> [email protected] >>>> >>>> On Jan 28, 2015, at 2:25 PM, Tol O. <[email protected]> wrote: >>>> >>>> Hi, >>>> >>>> I am following the cTAKES 3.2 User Install Guide with cTAKES 3.2.1 >>>> using Linux and Java 8. >>>> >>>> At step 8 of the Collection Processing Engine (CPE) (click the play >>>> button) I am get an error message: >>>> "org.apache.uima.resource.ResourceInitializationException: >>>> Initialization of CAS Processor with name "AggregateCdaProcessor" failed. >>>> [...] Caused by: java.lang.IllegalArgumentException: URI is not >>>> hierarchical." >>>> >>>> I read a bit on this mailing list and saw that other people also >>>> encountered such or a similar error. I followed the install guide step by >>>> step and extracted/copied the cTAKES resources folder over the already >>>> existing resources folder of cTAKES. >>>> >>>> Does anybody know how to fix this Exception problem to run the >>>> Collection Processing Engine (CPE)? >>>> >>>> Many thanks! >>>> >>>> >>>> >>> >> >
