Hi, I am running ctakes 3.2.1 on my mac and I went through user install guide step by step (https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+User+Install+Guide). I successfully ran ctakesCVD with UMLS and AggregatePlaintextFastUMLSProcessor.xml. However, when I tested bin/runctakesCPE.sh with test1.xml as it is described in the tutorial, I am getting the following error in the terminal:
org.apache.uima.resource.ResourceInitializationException: Initialization of CAS Processor with name "AggregateCdaProcessor" failed. at org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:83) at org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingEngine(UIMAFramework_impl.java:420) at org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAFramework.java:864) at org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573) at org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105) at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713) Caused by: org.apache.uima.resource.ResourceConfigurationException: Initialization of CAS Processor with name "AggregateCdaProcessor" failed. at org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1104) at org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProcessors(CPEFactory.java:550) at org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java:253) at org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.java:127) at org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:75) ... 5 more Caused by: java.lang.IllegalArgumentException: URI is not hierarchical at java.io.File.<init>(File.java:418) at org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImpl.java:44) at org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:603) at org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources(ResourceManager_impl.java:442) at org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase.java:153) at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize(AnalysisEngineImplBase.java:157) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:123) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425) at org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1088) ... 9 more Could you please help me to resolve this error? Best, Saeed
