The instructions should read: ditto /tmp/resources /usr/local/apache-ctakes-3.2.1/resources
On Wed, Apr 8, 2015 at 11:47 AM, Lance Eason <[email protected]> wrote: > Saeed, > > The install instructions for Mac tell you to merge in the resources using: > > ditto /tmp/resources/* /usr/local/apache-ctakes-3.2.1/resources > > This places the files at the wrong location and leads to the error above. > I ended up copying the resources into the appropriate location by hand. > > - Lance > > On Wed, Apr 8, 2015 at 11:24 AM, Saeed Hassanpour <[email protected]> > wrote: > >> Hi, >> >> I am running ctakes 3.2.1 on my mac and I went through user install >> guide step by step >> ( >> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+User+Install+Guide >> ). >> I successfully ran ctakesCVD with UMLS and >> AggregatePlaintextFastUMLSProcessor.xml. However, when I tested >> bin/runctakesCPE.sh with test1.xml as it is described in the tutorial, >> I am getting the following error in the terminal: >> >> org.apache.uima.resource.ResourceInitializationException: >> Initialization of CAS Processor with name "AggregateCdaProcessor" >> failed. >> at >> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:83) >> at >> org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingEngine(UIMAFramework_impl.java:420) >> at >> org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAFramework.java:864) >> at org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573) >> at org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105) >> at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713) >> Caused by: org.apache.uima.resource.ResourceConfigurationException: >> Initialization of CAS Processor with name "AggregateCdaProcessor" >> failed. >> at >> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1104) >> at >> org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProcessors(CPEFactory.java:550) >> at >> org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java:253) >> at >> org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.java:127) >> at >> org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:75) >> ... 5 more >> Caused by: java.lang.IllegalArgumentException: URI is not hierarchical >> at java.io.File.<init>(File.java:418) >> at >> org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImpl.java:44) >> at >> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:603) >> at >> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources(ResourceManager_impl.java:442) >> at >> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase.java:153) >> at >> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize(AnalysisEngineImplBase.java:157) >> at >> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:123) >> at >> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) >> at >> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> at >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) >> at >> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) >> at >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) >> at >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >> at >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) >> at >> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) >> at >> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) >> at >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425) >> at >> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1088) >> ... 9 more >> >> Could you please help me to resolve this error? >> >> Best, >> Saeed >> > > > > -- > ......................................................... > *Lance Eason* > Iodine Software > Vice President of Engineering > [email protected] > 512.785.5195 office | 801.203.8987 fax > ......................................................... > > -- ......................................................... *Lance Eason* Iodine Software Vice President of Engineering [email protected] 512.785.5195 office | 801.203.8987 fax .........................................................
