The runCVD profile is defined in the pom.xml file that is within ctakes-clinical-pipeline, and that pom doesn't include ctakes-drug-ner in its list of dependencies. I'll take a look this afternoon at a recommendation.
The AggregatePlaintextFastUMLSProcessor.xml file uses a relative path when referencing DrugMentionAnnotator.xml but the class folder for ctakes-drug-ner module is not in the classpath because the ctakes-drug-ner is not in the list of dependencies On Fri, Dec 22, 2017 at 11:20 AM, Manuel Lamy <[email protected]> wrote: > Hello guys, > > I'm using cTAKES version 4.0.0, developer version, using Intellij. I did > all the setup of the project as per the Intellij section in the *Developer > Install Guide* present in the url: https://cwiki.apache.org/ > confluence/display/CTAKES/cTAKES+4.0+Developer+Install+Guide > > Even so, I'm unfortunately having a strange error when I try to load the > *AggregatePlaintextFastUMLSProcessor.xml > *in CAS Visual Debbuger (CVD module). > > The error is the following: > > > [image: Imagem inline 1] > I also leave the top of the stack trace from the log: > > *<date>2017-12-22T15:59:06</date>* > * <millis>1513958346021</millis>* > * <sequence>2</sequence>* > * <logger>org.apache.uima</logger>* > * <level>SEVERE</level>* > * <class>org.apache.uima.tools.cvd.MainFrame</class>* > * <method>handleException(527)</method>* > * <thread>22</thread>* > > * <message>Annotator class "org.apache.ctakes.drugner.ae > <http://org.apache.ctakes.drugner.ae>.DrugMentionAnnotator" was not found. > (Descriptor: > file:/C:/Users/Manel/Desktop/Tese_Mestrado_NLP/cTAKES_Dev_Tese/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>* > > * <exception>* > * <message>org.apache.uima.resource.ResourceInitializationException: > Annotator class "org.apache.ctakes.drugner.ae > <http://org.apache.ctakes.drugner.ae>.DrugMentionAnnotator" was not found. > (Descriptor: > file:/C:/Users/Manel/Desktop/Tese_Mestrado_NLP/cTAKES_Dev_Tese/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>* > * <frame>* > * > <class>org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl</class>* > * <method>initializeAnalysisComponent</method>* > * <line>224</line>* > * </frame>* > * <frame>* > * > <class>org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl</class>* > * <method>initialize</method>* > * <line>172</line>* > > > I can't quite understand this error, since the class > org.apache.ctakes.drugner.ae.DrugMentionAnnotator *physically exists *in > the path referenced in the xml descriptor file. Did someone also had this > problem? > > I'm blocked. I just can't advance in my project because all the solutions > I came up with to this problem, like passing the full path, didn't work at > all. > > I would be appreciated if someone could give me some help. Thanks in > advance. > > Best regards, > > Manuel >
