Hello James, Thanks for your quick answer. I've been battling this problem in the last few days.
So should I start by adding ctakes-drug-ner as a dependency of ctakes-clinical-pipeline module? I see where the error comes from yes. I hope to hear from you later concerning this problem. Thank you! Best regards, Manuel Lamy 2017-12-26 18:28 GMT+00:00 James Masanz <[email protected]>: > The runCVD profile is defined in the pom.xml file that is within > ctakes-clinical-pipeline, and that pom doesn't include ctakes-drug-ner in > its list of dependencies. I'll take a look this afternoon at a > recommendation. > > The AggregatePlaintextFastUMLSProcessor.xml file uses a relative path > when referencing DrugMentionAnnotator.xml but the class folder for > ctakes-drug-ner module is not in the classpath because the ctakes-drug-ner > is not in the list of dependencies > > > > On Fri, Dec 22, 2017 at 11:20 AM, Manuel Lamy <[email protected]> wrote: > >> Hello guys, >> >> I'm using cTAKES version 4.0.0, developer version, using Intellij. I did >> all the setup of the project as per the Intellij section in the *Developer >> Install Guide* present in the url: https://cwiki.apache.org/confl >> uence/display/CTAKES/cTAKES+4.0+Developer+Install+Guide >> >> Even so, I'm unfortunately having a strange error when I try to load the >> *AggregatePlaintextFastUMLSProcessor.xml >> *in CAS Visual Debbuger (CVD module). >> >> The error is the following: >> >> >> [image: Imagem inline 1] >> I also leave the top of the stack trace from the log: >> >> *<date>2017-12-22T15:59:06</date>* >> * <millis>1513958346021</millis>* >> * <sequence>2</sequence>* >> * <logger>org.apache.uima</logger>* >> * <level>SEVERE</level>* >> * <class>org.apache.uima.tools.cvd.MainFrame</class>* >> * <method>handleException(527)</method>* >> * <thread>22</thread>* >> >> * <message>Annotator class "org.apache.ctakes.drugner.ae >> <http://org.apache.ctakes.drugner.ae>.DrugMentionAnnotator" was not found. >> (Descriptor: >> file:/C:/Users/Manel/Desktop/Tese_Mestrado_NLP/cTAKES_Dev_Tese/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>* >> >> * <exception>* >> * <message>org.apache.uima.resource.ResourceInitializationException: >> Annotator class "org.apache.ctakes.drugner.ae >> <http://org.apache.ctakes.drugner.ae>.DrugMentionAnnotator" was not found. >> (Descriptor: >> file:/C:/Users/Manel/Desktop/Tese_Mestrado_NLP/cTAKES_Dev_Tese/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>* >> * <frame>* >> * >> <class>org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl</class>* >> * <method>initializeAnalysisComponent</method>* >> * <line>224</line>* >> * </frame>* >> * <frame>* >> * >> <class>org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl</class>* >> * <method>initialize</method>* >> * <line>172</line>* >> >> >> I can't quite understand this error, since the class >> org.apache.ctakes.drugner.ae.DrugMentionAnnotator *physically exists *in >> the path referenced in the xml descriptor file. Did someone also had this >> problem? >> >> I'm blocked. I just can't advance in my project because all the solutions >> I came up with to this problem, like passing the full path, didn't work at >> all. >> >> I would be appreciated if someone could give me some help. Thanks in >> advance. >> >> Best regards, >> >> Manuel >> > >
