Using intellij IDEA to work on a ctakes project. Currently I have added the
jars by copying them to some folder and pointing intellij to that folder as
a library in the File --> Project Structure. The way I am using the
resources/ folder right now is by having it in the same folder as a src
folder in the intellij project ("marked as" as "source" folder) and using
the context menu on this resources/ copy to "mark as" a "resource root"
(doing same for desc/ folder) (please let me know if this is notthe correct
way to be doing this).I a running a simple variation of the HelloWorldAggregatePipeline.java (that can be found in the ctakes trunk/ctakes-examples/...) using the ClinicalPipelineFactory.getDefaultPipeline() and getting error message: 05 Apr 2018 13:02:17 INFO DictionaryDescriptorParser - Parsing dictionary > specifications: > 05 Apr 2018 13:02:17 INFO UmlsUserApprover - Checking UMLS Account at > https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser: > *...05 Apr 2018 13:02:19 INFO UmlsUserApprover - UMLS Account has been > validated* > Exception in thread "main" 05 Apr 2018 13:02:19 ERROR *JdbcRareWordDictionary > - Could not Connect to Dictionary sno_rx_16abTerms* > org.apache.uima.resource.ResourceInitializationException: Initialization > of annotator class > "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. > (Descriptor: <unknown>) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:274) The problem seems to be "*JdbcRareWordDictionary - Could not Connect to Dictionary sno_rx_16abTerms*". Yet, I see that I am passing as a valid UMLS user, so I don' know why else this would be failing. I (think I) see that this connection info is stored in /resources/org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml, but don't know how it is being accessed in the code. If anyone knows what's going on here, any suggestions would be appreciated. Thanks.
