Thanks, which is my next curiosity... if I head over to
http://giraph.apache.org/ I see at the top is says
"Version: 1.1.0-SNAPSHOT | Last Published: 2013-08-10"
However it's not clickable and the only download links I see are for
1.0.0. I'm assuming trunk in git isn't the same as the 1.1.0 snapshot
since more pushes have occurred since August, and I don't see a tag in
git for 1.1.0 (https://git-wip-us.apache.org/repos/asf?p=giraph.git).
So where does one get 1.1.0-SNAPSHOT from?
Thanks.
On 13-10-07 11:39 AM, Silvio Di gregorio wrote:
Hi Matthew
I use giraph 1.1.0 and cdh4 hadoop 0.23
the patch of Marco:
http://www.mail-archive.com/[email protected]/__msg00945/check.diff
<http://www.mail-archive.com/[email protected]/msg00945/check.diff>
and build
mvn clean install -P hadoop_cdh4.1.2
Il giorno 07/ott/2013 20:20, "Matthew Laird" <[email protected]
<mailto:[email protected]>> ha scritto:
Hello, so I'm watching this thread with interest as well, since
that's the exact example I'll be trying to run as well, and I see
Silvio appears to be asking about running Giraph 1.0 against Hadoop
2.0.0.
I'm curious, is that a known working combination, 1.0 vs 2.0.x? And
if so, are there patches to apply first and what maven command line
should I build with? (ie. will a -Dhadoop.version=2.0.5 give the
needed MR based API or will it use YARN?) I figure it's better to
ask than aimlessly try all the combinations. :)
Thanks!
On 13-10-07 11:01 AM, Claudio Martella wrote:
try to increase the mappers' heap space through
mapred.child.java.opts.
On Mon, Oct 7, 2013 at 1:18 PM, Silvio Di gregorio
<[email protected]
<mailto:[email protected]>
<mailto:silvio.digregorio@__gmail.com
<mailto:[email protected]>>> wrote:
I think now my issue is another, thanks to all.
java.lang.__IllegalStateException: run: Caught an
unrecoverable exception waitFor: ExecutionException occurred
while waiting for
org.apache.giraph.utils.__ProgressableUtils$__FutureWaitable@73a01e8a
at
org.apache.giraph.graph.__GraphMapper.run(GraphMapper.__java:102)
......
Caused by: java.lang.__IllegalStateException: waitFor:
ExecutionException occurred while waiting for
org.apache.giraph.utils.__ProgressableUtils$__FutureWaitable@73a01e8a
at
org.apache.giraph.utils.__ProgressableUtils.waitFor(__ProgressableUtils.java:151)
... 7 more
Caused by: java.util.concurrent.__ExecutionException:
java.lang.OutOfMemoryError:*__Java heap space*
at
org.apache.giraph.utils.__ProgressableUtils.waitFor(__ProgressableUtils.java:143)
... 13 more
2013/10/7 Claudio Martella <[email protected]
<mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>>
OK, thanks.
I really have to push that patch in.
On Mon, Oct 7, 2013 at 12:17 PM, Silvio Di gregorio
<[email protected] <mailto:[email protected]>
<mailto:silvio.digregorio@__gmail.com
<mailto:[email protected]>>> wrote:
yes i do,
i have seen this in your post in:
http://www.mail-archive.com/[email protected]/__msg00957.html
<http://www.mail-archive.com/[email protected]/msg00957.html>
excuse me if i had checked in the mail-achive
first I would
have avoided the last post.
Now zk issue are resolved.
2013/10/7 Claudio Martella
<[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>>
Can you try applying this one first?
<<< <
http://www.mail-archive.com/[email protected]/__msg00945/check.diff
<http://www.mail-archive.com/[email protected]/msg00945/check.diff><<<<
On Mon, Oct 7, 2013 at 8:40 AM, Silvio Di gregorio
<[email protected] <mailto:[email protected]>
<mailto:silvio.digregorio@__gmail.com
<mailto:[email protected]>>> wrote:
*As i said i have builded*
/giraph-examples-1.0.0-for-__hadoop-2.0.0-cdh4.1.2-jar-__with-dependencies.jar/
*for cdh4, successfully. The job start to
monitoring the success rate:*
/13/10/07 08:28:45 INFO mapred.JobClient:
map 0% reduce 0%/
*but then*
/Error running child
java.lang.__IllegalStateException: run:
Caught an unrecoverable exception java.io.FileNotFoundException:
File _bsp/_defaultZkManagerDir/job___201309181636_0678/_zkServer
does not exist.
/
/.../
/Caused by: java.lang.RuntimeException:
java.io.FileNotFoundException: File
_bsp/_defaultZkManagerDir/job___201309181636_0678/_zkServer does
not exist./
2013/10/5 Silvio Di gregorio
<[email protected] <mailto:[email protected]>
<mailto:silvio.digregorio@__gmail.com
<mailto:[email protected]>>>
I ha ve build w/ hadoop_cdh4.1.2 parameter.
Something is changed, monday i report the
result. Now the farm is closed.
Il giorno 05/ott/2013 14:06, "Claudio
Martella"
<[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>> ha scritto:
Oh, right, -vof is in trunk. Anyway
it looks
like you built giraph for the wrong
profile.
You mentioned you're running on
2.0, but
your giraph is built for 0.20.203
<tel:0.20.203>
<tel:0.20.203 <tel:0.20.203>>. try building with a profile
for your hadoop version.
On Fri, Oct 4, 2013 at 2:35 PM,
Silvio Di
gregorio
<[email protected] <mailto:[email protected]>
<mailto:silvio.digregorio@__gmail.com
<mailto:[email protected]>>> wrote:
org.apache.commons.cli.__UnrecognizedOptionException:
Unrecognized option: -vof
in 1.0 version is
-of,--outputFormat <arg>
Vertex output format
-op,--outputPath <arg>
Vertex output path
2013/10/4 Claudio Martella
<[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>>
did you try the argument
(-vof) i
suggested?
On Fri, Oct 4, 2013 at 2:13 PM,
Silvio Di gregorio
<[email protected] <mailto:[email protected]>
<mailto:silvio.digregorio@__gmail.com
<mailto:[email protected]>>> wrote:
i've specified -of
org.apache.giraph.io.formats.__IdWithValueTextOutputFormat
but the same error was
produced
Exception in thread "main"
java.lang.__IncompatibleClassChangeError:
Found interface
org.apache.hadoop.mapreduce.__JobContext,
but class was expected
at
org.apache.giraph.bsp.__BspOutputFormat.__checkOutputSpecs(__BspOutputFormat.java:43)
at
org.apache.hadoop.mapred.__JobClient$2.run(JobClient.__java:984)
at
org.apache.hadoop.mapred.__JobClient$2.run(JobClient.__java:945)
at
java.security.__AccessController.doPrivileged(__Native
Method)
at
javax.security.auth.Subject.__doAs(Subject.java:396)
at
org.apache.hadoop.security.__UserGroupInformation.doAs(__UserGroupInformation.java:__1408)
at
org.apache.hadoop.mapred.__JobClient.submitJobInternal(__JobClient.java:945)
at
org.apache.hadoop.mapreduce.__Job.submit(Job.java:566)
at
org.apache.hadoop.mapreduce.__Job.waitForCompletion(Job.__java:596)
at
org.apache.giraph.job.__GiraphJob.run(GiraphJob.java:__237)
at
org.apache.giraph.__GiraphRunner.run(GiraphRunner.__java:94)
at
org.apache.hadoop.util.__ToolRunner.run(ToolRunner.__java:70)
at
org.apache.hadoop.util.__ToolRunner.run(ToolRunner.__java:84)
at
org.apache.giraph.__GiraphRunner.main(__GiraphRunner.java:124)
at
sun.reflect.__NativeMethodAccessorImpl.__invoke0(Native
Method)
at
sun.reflect.__NativeMethodAccessorImpl.__invoke(__NativeMethodAccessorImpl.java:__39)
at
sun.reflect.__DelegatingMethodAccessorImpl.__invoke(__DelegatingMethodAccessorImpl.__java:25)
at
java.lang.reflect.Method.__invoke(Method.java:597)
at
org.apache.hadoop.util.RunJar.__main(RunJar.java:208)
2013/10/4 Claudio Martella
<[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>>
Hi,
you need to specify the
vertex outputformat
class
(-vof option), e.g.
org.apache.giraph.io.formats.__IdWithValueTextOutputFormat.
On Fri, Oct 4, 2013
at 1:06
PM, Silvio Di gregorio
<[email protected] <mailto:[email protected]>
<mailto:silvio.digregorio@__gmail.com
<mailto:[email protected]>>>
wrote:
Hi,
I hope I have
sent to
the right address.
i have a graph
(directed
and unweighted)
stored
in hdfs like a
adjacency
list (140Milions of
edges 6Milions
of vertex)
node<tab>neighbors
23 2 1 3
4 3
1 999 99923 <tel:1%20999%2099923>
<tel:1%20999%2099923>
909 .......
......
hadoop version
Hadoop
2.0.0-cdh4.3.0
- java 1.6
I have executed the
giraph-1.0
connected
components
example, in
this fashion
> hadoop jar
/usr/local/giraph/giraph-__examples/target/giraph-__examples-1.0.0-for-hadoop-0.20.203.0
<tel:0.20.203.0>
<tel:0.20.203.0 <tel:0.20.203.0>>-jar-with-dependencies.__jar
org.apache.giraph.GiraphRunner
org.apache.giraph.examples.__ConnectedComponentsVertex
-vif
org.apache.giraph.io.formats.__IntIntNullTextInputFormat
-vip
/user/hdfs/lista_adj_txt
-op
connectedgiraph
--workers 4
and then fail with:
13/10/04
09:28:29 INFO
utils.ConfigurationUtils: No
edge input format
specified.
Ensure your
InputFormat
does not
require one.
13/10/04
09:28:29 INFO
utils.ConfigurationUtils: No
output format
specified.
Ensure your
OutputFormat
does not
require one.
13/10/04
09:28:30 INFO
job.GiraphJob: run:
Since
checkpointing is
disabled
(default), do
not allow any task
retries (setting
mapred.map.max.attempts
= 0, old value = 4)
13/10/04
09:28:31 WARN
mapred.JobClient: Use
GenericOptionsParser for
parsing the
arguments.
Applications should
implement Tool
for the same.
13/10/04
09:28:31 INFO
mapred.JobClient:
Cleaning up the
staging
area
hdfs://srv-bigdata-dev-01.int.__sose.it:8020/user/hdfs/.__staging/job_201309181636_0535
<http://srv-bigdata-dev-01.int.sose.it:8020/user/hdfs/.staging/job_201309181636_0535>
<http://srv-bigdata-dev-01.__int.sose.it:8020/user/hdfs/.__staging/job_201309181636_0535
<http://srv-bigdata-dev-01.int.sose.it:8020/user/hdfs/.staging/job_201309181636_0535>>
Exception in thread
"main"
java.lang.__IncompatibleClassChangeError:
Found interface
org.apache.hadoop.mapreduce.__JobContext,
but class was
expected
at
org.apache.giraph.bsp.__BspOutputFormat.__checkOutputSpecs(__BspOutputFormat.java:43)
......
Thanks in advance
--
Claudio Martella
[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>
--
Claudio Martella
[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>
--
Claudio Martella
[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>
--
Claudio Martella
[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>
--
Claudio Martella
[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>
--
Claudio Martella
[email protected] <mailto:[email protected]>
<mailto:claudio.martella@__gmail.com
<mailto:[email protected]>>
--
Matthew Laird
Lead Software Developer, Bioinformatics
Brinkman Laboratory
Simon Fraser University, Burnaby, BC, Canada
--
Matthew Laird
Lead Software Developer, Bioinformatics
Brinkman Laboratory
Simon Fraser University, Burnaby, BC, Canada
