Thanks, I appreciate the feedback! It's why open source projects are great.

So just to be clear, I should grab the 1.0 release, and you've successfully built it against a Hadoop 2.0.x release? I add that patch from Claudio first, then use -Dhadoop.version=2.0.5 to build? It will still have the MR API in place?

I'll get through that then see what happens with this whole split master-worker setup I have on my Hadoop installation which caused the examples to fail. Then on to trying to load my billion vertices and clustering the graph (I basically want all the sub-groups of connected components, these will be the related genes across all sequenced bacteria).

Thanks again!

On 13-10-07 12:56 PM, Silvio Di gregorio wrote:
with a working day in my shoulders and my children around  i gave you
random version,
tomorrow morning in farm i'll be more precise.
though i have hadoop 2.0 i use MR1 not YARN.
I'm sorry again.


2013/10/7 Matthew Laird <[email protected] <mailto:[email protected]>>

    Hmm, it seems there have been some recent pushes that have broken
    trunk as I discovered yesterday. :)

    But I guess that brings me back to my original question, to build
    against 2.0.5 using the MR interface rather than YARN as Milinda
    suggested, what profile would I use?  Would I let it think it's
    0.20xxx or tell it 2.0.5, or something else?

    Thanks.


    On 13-10-07 11:50 AM, Claudio Martella wrote:

        trunk is 1.1.0-SNAPSHOT. I believe the date refers to the last
        update to
        the site.


        On Mon, Oct 7, 2013 at 8:48 PM, Matthew Laird <[email protected]
        <mailto:[email protected]>
        <mailto:[email protected] <mailto:[email protected]>>> wrote:

             Thanks, which is my next curiosity... if I head over to
        http://giraph.apache.org/ I see at the top is says

        "Version: 1.1.0-SNAPSHOT | Last Published: 2013-08-10"

             However it's not clickable and the only download links I
        see are for
             1.0.0.  I'm assuming trunk in git isn't the same as the 1.1.0
             snapshot since more pushes have occurred since August, and
        I don't
             see a tag in git for 1.1.0
             (https://git-wip-us.apache.____org/repos/asf?p=giraph.git
        <https://git-wip-us.apache.__org/repos/asf?p=giraph.git
        <https://git-wip-us.apache.org/repos/asf?p=giraph.git>>). So where

             does one get 1.1.0-SNAPSHOT from?

             Thanks.


             On 13-10-07 11:39 AM, Silvio Di gregorio wrote:

                 Hi Matthew
                 I use giraph 1.1.0 and cdh4 hadoop 0.23

                 the patch of Marco:

        
http://www.mail-archive.com/[email protected]/______msg00945/check.diff
        
<http://www.mail-archive.com/[email protected]/____msg00945/check.diff>
        
<http://www.mail-archive.com/[email protected]/____msg00945/check.diff
        
<http://www.mail-archive.com/[email protected]/__msg00945/check.diff>>


        
<http://www.mail-archive.com/[email protected]/____msg00945/check.diff
        
<http://www.mail-archive.com/[email protected]/__msg00945/check.diff>
        
<http://www.mail-archive.com/[email protected]/__msg00945/check.diff
        
<http://www.mail-archive.com/[email protected]/msg00945/check.diff>>>

                 and build

                 mvn clean install -P hadoop_cdh4.1.2



                 Il giorno 07/ott/2013 20:20, "Matthew Laird"
        <[email protected] <mailto:[email protected]>
        <mailto:[email protected] <mailto:[email protected]>>
        <mailto:[email protected] <mailto:[email protected]>
        <mailto:[email protected] <mailto:[email protected]>>>> ha scritto:



                      Hello, so I'm watching this thread with interest
        as well, since
                      that's the exact example I'll be trying to run as
        well, and
                 I see
                      Silvio appears to be asking about running Giraph 1.0
                 against Hadoop
                      2.0.0.

                      I'm curious, is that a known working combination,
        1.0 vs
                 2.0.x?  And
                      if so, are there patches to apply first and what maven
                 command line
                      should I build with? (ie. will a
        -Dhadoop.version=2.0.5
                 give the
                      needed MR based API or will it use YARN?)  I
        figure it's
                 better to
                      ask than aimlessly try all the combinations. :)

                      Thanks!

                      On 13-10-07 11:01 AM, Claudio Martella wrote:

                          try to increase the mappers' heap space through
                          mapred.child.java.opts.


                          On Mon, Oct 7, 2013 at 1:18 PM, Silvio Di gregorio
        <[email protected]
        <mailto:[email protected]>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>
        <mailto:silvio.digregorio@ <mailto:silvio.digregorio@>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>>__g__m__ail.com <http://gm__ail.com>
        <http://gmail.com>


        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>>> wrote:


                               I think now my issue is another, thanks
        to all.




                               java.lang.______IllegalStateException:
        run: Caught an


                          unrecoverable exception waitFor:
        ExecutionException
                 occurred
                          while waiting for


        
org.apache.giraph.utils.______ProgressableUtils$______FutureWaitable@73a01e8a
                                   at


        
org.apache.giraph.graph.______GraphMapper.run(GraphMapper.______java:102)



                                   ......
                               Caused by:
        java.lang.______IllegalStateException:

                 waitFor:

                          ExecutionException occurred while waiting for


        
org.apache.giraph.utils.______ProgressableUtils$______FutureWaitable@73a01e8a
                                   at


        
org.apache.giraph.utils.______ProgressableUtils.waitFor(______ProgressableUtils.java:151)




                                   ... 7 more
                               Caused by:
                 java.util.concurrent.______ExecutionException:
                          java.lang.OutOfMemoryError:*______Java heap space*
                                   at


        
org.apache.giraph.utils.______ProgressableUtils.waitFor(______ProgressableUtils.java:143)





                                   ... 13 more



                               2013/10/7 Claudio Martella
        <[email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>>

                                   OK, thanks.

                                   I really have to push that patch in.


                                   On Mon, Oct 7, 2013 at 12:17 PM,
        Silvio Di
                 gregorio
        <[email protected] <mailto:[email protected]>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>
        <mailto:silvio.digregorio@ <mailto:silvio.digregorio@>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>>__g__m__ail.com <http://gm__ail.com>
        <http://gmail.com>


        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>>> wrote:

                                       yes i do,
                                       i have seen this in your post in:
        
http://www.mail-archive.com/[email protected]/______msg00957.html
        
<http://www.mail-archive.com/[email protected]/____msg00957.html>
        
<http://www.mail-archive.com/[email protected]/____msg00957.html
        <http://www.mail-archive.com/[email protected]/__msg00957.html>>


        
<http://www.mail-archive.com/[email protected]/____msg00957.html
        <http://www.mail-archive.com/[email protected]/__msg00957.html>
        <http://www.mail-archive.com/[email protected]/__msg00957.html
        <http://www.mail-archive.com/[email protected]/msg00957.html>>>

                                       excuse me if  i had checked in
        the mail-achive
                          first I would
                                       have avoided the last post.

                                       Now zk issue are resolved.


                                       2013/10/7 Claudio Martella
        <[email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>>

                                           Can you try applying this one
        first?

        <<< <
        
http://www.mail-archive.com/[email protected]/______msg00945/check.diff
        
<http://www.mail-archive.com/[email protected]/____msg00945/check.diff>
        
<http://www.mail-archive.com/[email protected]/____msg00945/check.diff
        
<http://www.mail-archive.com/[email protected]/__msg00945/check.diff>>


        
<http://www.mail-archive.com/[email protected]/____msg00945/check.diff
        
<http://www.mail-archive.com/[email protected]/__msg00945/check.diff>
        
<http://www.mail-archive.com/[email protected]/__msg00945/check.diff
        
<http://www.mail-archive.com/[email protected]/msg00945/check.diff>>><<<<


                                           On Mon, Oct 7, 2013 at 8:40
        AM, Silvio
                 Di gregorio
        <[email protected] <mailto:[email protected]>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>
        <mailto:silvio.digregorio@ <mailto:silvio.digregorio@>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>>__g__m__ail.com <http://gm__ail.com>
        <http://gmail.com>


        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>>> wrote:







                                               *As i said i have builded*







        
/giraph-examples-1.0.0-for-______hadoop-2.0.0-cdh4.1.2-jar-______with-dependencies.jar/















                                               *for cdh4, successfully.
        The job
                 start to
                          monitoring the success rate:*













                                               /13/10/07 08:28:45 INFO
                 mapred.JobClient:
                            map 0% reduce 0%/




                                               *but then*




                                               /Error running child

                   java.lang.______IllegalStateException: run:


                          Caught an unrecoverable exception
                 java.io.FileNotFoundException:
                          File

        _bsp/_defaultZkManagerDir/job_______201309181636_0678/___zkServer


                          does not exist.
                                               /













                                               /.../







                                               /Caused by:
                 java.lang.RuntimeException:
                          java.io.FileNotFoundException: File


        _bsp/_defaultZkManagerDir/job_______201309181636_0678/___zkServer does


                          not exist./










                                               2013/10/5 Silvio Di gregorio
        <[email protected] <mailto:[email protected]>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>
        <mailto:silvio.digregorio@ <mailto:silvio.digregorio@>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>>__g__m__ail.com <http://gm__ail.com>
        <http://gmail.com>


        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>>>

                                                   I ha ve build w/
                 hadoop_cdh4.1.2 parameter.
                                                   Something is changed,
        monday i
                 report the
                                                   result. Now the farm
        is closed.

                                                   Il giorno 05/ott/2013
        14:06,
        "Claudio
                          Martella"
        <[email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>> ha scritto:

                                                       Oh, right, -vof is in
                 trunk. Anyway
                          it looks
                                                       like you built
        giraph for
                 the wrong
                          profile.
                                                       You mentioned you're
                 running on
                          2.0, but
                                                       your giraph is
        built for
        0.20.203 <tel:0.20.203> <tel:0.20.203 <tel:0.20.203>>
        <tel:0.20.203 <tel:0.20.203> <tel:0.20.203 <tel:0.20.203>>>
        <tel:0.20.203 <tel:0.20.203> <tel:0.20.203 <tel:0.20.203>>
        <tel:0.20.203 <tel:0.20.203> <tel:0.20.203 <tel:0.20.203>>>>. try

                 building with a profile

                                                       for your hadoop
        version.


                                                       On Fri, Oct 4,
        2013 at
                 2:35 PM,
                          Silvio Di
                                                       gregorio
        <[email protected] <mailto:[email protected]>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>
        <mailto:silvio.digregorio@ <mailto:silvio.digregorio@>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>>__g__m__ail.com <http://gm__ail.com>
        <http://gmail.com>

        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>>> wrote:




          org.apache.commons.cli.______UnrecognizedOptionException:


                                                           Unrecognized
        option: -vof

                                                           in 1.0 version is

        -of,--outputFormat <arg>
                                                           Vertex output
        format

        -op,--outputPath <arg>
                                                           Vertex output
        path



                                                           2013/10/4
        Claudio Martella
        <[email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>>

                                                               did you
        try the
                 argument
                          (-vof) i
                                                               suggested?


                                                               On Fri,
        Oct 4,
                 2013 at 2:13 PM,
                                                               Silvio Di
        gregorio
        <[email protected] <mailto:[email protected]>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>
        <mailto:silvio.digregorio@ <mailto:silvio.digregorio@>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>>__g__m__ail.com <http://gm__ail.com>
        <http://gmail.com>


        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>>> wrote:


                                                                   i've
        specified
                   -of



        org.apache.giraph.io.formats.______IdWithValueTextOutputFormat



                                                                   but
        the same
                 error was
                          produced


        Exception in
                 thread "main"

                          java.lang.______IncompatibleClassChangeError:
                                                                   Found
        interface

                          org.apache.hadoop.mapreduce.______JobContext,


                                                                   but
        class was
                 expected

            at



        
org.apache.giraph.bsp.______BspOutputFormat.______checkOutputSpecs(______BspOutputFormat.java:43)

            at



        org.apache.hadoop.mapred.______JobClient$2.run(JobClient.______java:984)

            at



        org.apache.hadoop.mapred.______JobClient$2.run(JobClient.______java:945)

            at


          java.security.______AccessController.doPrivileged(______Native
                                                                   Method)

            at


          javax.security.auth.Subject.______doAs(Subject.java:396)

            at



        
org.apache.hadoop.security.______UserGroupInformation.doAs(______UserGroupInformation.java:______1408)

            at



        
org.apache.hadoop.mapred.______JobClient.submitJobInternal(______JobClient.java:945)

            at


          org.apache.hadoop.mapreduce.______Job.submit(Job.java:566)

            at



        
org.apache.hadoop.mapreduce.______Job.waitForCompletion(Job.______java:596)

            at



        org.apache.giraph.job.______GiraphJob.run(GiraphJob.java:______237)

            at



        org.apache.giraph.______GiraphRunner.run(GiraphRunner.______java:94)

            at



        org.apache.hadoop.util.______ToolRunner.run(ToolRunner.______java:70)

            at



        org.apache.hadoop.util.______ToolRunner.run(ToolRunner.______java:84)

            at



        org.apache.giraph.______GiraphRunner.main(______GiraphRunner.java:124)

            at


          sun.reflect.______NativeMethodAccessorImpl.______invoke0(Native
                                                                   Method)

            at



        
sun.reflect.______NativeMethodAccessorImpl.______invoke(______NativeMethodAccessorImpl.java:______39)

            at



        
sun.reflect.______DelegatingMethodAccessorImpl.______invoke(______DelegatingMethodAccessorImpl.______java:25)

            at


          java.lang.reflect.Method.______invoke(Method.java:597)

            at


          org.apache.hadoop.util.RunJar.______main(RunJar.java:208)





                                                                   2013/10/4
                 Claudio Martella
        <[email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>>

                                                                       Hi,


        you need
                 to specify the

        vertex
                 outputformat
                          class
                                                                       (-vof
                 option), e.g.



        org.apache.giraph.io.formats.________IdWithValueTextOutputFormat.





        On Fri,
                 Oct 4, 2013
                          at 1:06

        PM, Silvio
                 Di gregorio
        <[email protected] <mailto:[email protected]>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>
        <mailto:silvio.digregorio@ <mailto:silvio.digregorio@>
        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>>__g__m__ail.com <http://gm__ail.com>
        <http://gmail.com>


        <mailto:silvio.digregorio@
        <mailto:silvio.digregorio@>__gm__ail.com <http://gmail.com>
        <mailto:silvio.digregorio@__gmail.com
        <mailto:[email protected]>>>>>

        wrote:



           Hi,


           I hope
                 I have
                          sent to

           the
                 right address.


           i have
                 a graph
                          (directed

           and
                 unweighted)
                          stored

           in
                 hdfs like a
                          adjacency

           list
                 (140Milions of

           edges
                 6Milions
                          of vertex)


                   node<tab>neighbors


           23   2
                    1    3
                              4    3

        1 999 99923 <tel:1%20999%2099923> <tel:1%20999%2099923>
        <tel:1%20999%2099923>
        <tel:1%20999%2099923>

           909
                 .......


           ......


           hadoop
                 version
                          Hadoop

                   2.0.0-cdh4.3.0
                          - java 1.6



           I have
                 executed the

           giraph-1.0
                          connected

           components
                          example, in

           this
                 fashion

         >  hadoop jar



        
/usr/local/giraph/giraph-______examples/target/giraph-______examples-1.0.0-for-hadoop-0.20.203.0
        <tel:0.20.203.0>

        <tel:0.20.203.0 <tel:0.20.203.0>>
        <tel:0.20.203.0 <tel:0.20.203.0> <tel:0.20.203.0 <tel:0.20.203.0>>>
        <tel:0.20.203.0 <tel:0.20.203.0> <tel:0.20.203.0
        <tel:0.20.203.0>> <tel:0.20.203.0 <tel:0.20.203.0>
        <tel:0.20.203.0 <tel:0.20.203.0>>>>-jar-with-__dependencies.____jar

                          org.apache.giraph.GiraphRunner


          org.apache.giraph.examples.______ConnectedComponentsVertex

               -vif


          org.apache.giraph.io.formats.______IntIntNullTextInputFormat



               -vip

                          /user/hdfs/lista_adj_txt

               -op
                          connectedgiraph

                   --workers 4


           and
                 then fail with:


           13/10/04
                          09:28:29 INFO

                          utils.ConfigurationUtils: No

           edge
                 input format

           specified.
                          Ensure your

                   InputFormat
                          does not

                   require one.


           13/10/04
                          09:28:29 INFO

                          utils.ConfigurationUtils: No

           output
                 format
                          specified.

           Ensure
                 your
                          OutputFormat

           does not
                          require one.


           13/10/04
                          09:28:30 INFO

                   job.GiraphJob: run:

           Since
                          checkpointing is

           disabled
                          (default), do

           not
                 allow any task

                   retries (setting

                          mapred.map.max.attempts

           = 0,
                 old value = 4)


           13/10/04
                          09:28:31 WARN

                          mapred.JobClient: Use

                          GenericOptionsParser for

                   parsing the
                          arguments.

                   Applications should

                   implement Tool
                          for the same.


           13/10/04
                          09:28:31 INFO

                   mapred.JobClient:

                   Cleaning up the
                          staging

           area

                          hdfs://srv-bigdata-dev-01.int
        <http://srv-bigdata-dev-01.int>
        
<http://srv-bigdata-dev-01.int__>.____sose.it:8020/user/hdfs/.______staging/job_201309181636___0535
        <http://sose.it:8020/user/hdfs/.____staging/job_201309181636_0535>
        <http://sose.it:8020/user/__hdfs/.__staging/job___201309181636_0535
        <http://sose.it:8020/user/hdfs/.__staging/job_201309181636_0535>>

        
<http://srv-bigdata-dev-01.__i__nt.sose.it:8020/user/hdfs/.____staging/job_201309181636_0535
        <http://int.sose.it:8020/user/hdfs/.__staging/job_201309181636_0535>
        
<http://srv-bigdata-dev-01.__int.sose.it:8020/user/hdfs/.__staging/job_201309181636_0535
        
<http://srv-bigdata-dev-01.int.sose.it:8020/user/hdfs/.staging/job_201309181636_0535>>__>
        
<http://srv-bigdata-dev-01.__i____nt.sose.it:8020/user/hdfs/.______staging/job_201309181636___0535
        <http://i__nt.sose.it:8020/user/hdfs/.____staging/job_201309181636_0535>
        <http://int.sose.it:8020/user/__hdfs/.__staging/job___201309181636_0535
        <http://int.sose.it:8020/user/hdfs/.__staging/job_201309181636_0535>>

        
<http://srv-bigdata-dev-01.__i__nt.sose.it:8020/user/hdfs/.____staging/job_201309181636_0535
        <http://int.sose.it:8020/user/hdfs/.__staging/job_201309181636_0535>
        
<http://srv-bigdata-dev-01.__int.sose.it:8020/user/hdfs/.__staging/job_201309181636_0535
        
<http://srv-bigdata-dev-01.int.sose.it:8020/user/hdfs/.staging/job_201309181636_0535>>__>__>


                   Exception in thread
        "main"

                          java.lang.______IncompatibleClassChangeError:

           Found
                 interface

                          org.apache.hadoop.mapreduce.______JobContext,



           but
                 class was
                          expected


                    at



        
org.apache.giraph.bsp.______BspOutputFormat.______checkOutputSpecs(______BspOutputFormat.java:43)




           ......


           Thanks
                 in advance





                                                                       --

                   Claudio Martella
        [email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>






                                                               --

        Claudio Martella
        [email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>





                                                       --
                                                           Claudio Martella
        [email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>





                                           --
                                               Claudio Martella
        [email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>





                                   --
                                       Claudio Martella
        [email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>





                          --
                               Claudio Martella
        [email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>
        <mailto:claudio.martella@ <mailto:claudio.martella@>
        <mailto:claudio.martella@
        <mailto:claudio.martella@>>__gm__a__il.com <http://gma__il.com>
        <http://gmail.com>


        <mailto:claudio.martella@
        <mailto:claudio.martella@>__gma__il.com <http://gmail.com>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>>>


                      --
                      Matthew Laird
                      Lead Software Developer, Bioinformatics
                      Brinkman Laboratory
                      Simon Fraser University, Burnaby, BC, Canada


             --
             Matthew Laird
             Lead Software Developer, Bioinformatics
             Brinkman Laboratory
             Simon Fraser University, Burnaby, BC, Canada




        --
             Claudio Martella
        [email protected] <mailto:[email protected]>
        <mailto:claudio.martella@__gmail.com
        <mailto:[email protected]>>


    --
    Matthew Laird
    Lead Software Developer, Bioinformatics
    Brinkman Laboratory
    Simon Fraser University, Burnaby, BC, Canada



--
Matthew Laird
Lead Software Developer, Bioinformatics
Brinkman Laboratory
Simon Fraser University, Burnaby, BC, Canada

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