Looking at the Clipboard class, it has methods that would allow you to discover the type of the data pasted onto the clipboard. It would be quite possible to use if...else clauses to test and see if the Clipboard hasString() or hasRtf() etc and then call the appropriate method to simply dump the raw contents of the clipboards to a file or maybe to System.out initially. That should allow you to look at what you have copied and maybe give a clue as to how POI could work with the data.
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