Yes. It just passed the location of data file that I put to second component. Here is the xml from first input component.
<ns:workflowInvoked infoModelVersion="2.6" xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08";> <ns:notificationSource ns:serviceID="Workflow1_1e933fac_1c73_4fdf_90a1_3bb3b310d188" ns:experimentID="Workflow1_1e933fac-1c73-4fdf-90a1-3bb3b310d188" /> <ns:timestamp>2013-07-01T10:22:30.198+09:00</ns:timestamp> <ns:description>input_file_list=/tmp/input_file_list.txt</ns:description> <ns:annotation /> <ns:initiator ns:serviceID="Workflow1_1e933fac_1c73_4fdf_90a1_3bb3b310d188" /> </ns:workflowInvoked> Thank you, Heejoon. On Mon, Jul 1, 2013 at 1:14 PM, Chathura Herath <[email protected]>wrote: > I believe Xbaya runs your first component without error, is it not? I > was asking for the output xml of the first service . You may find this > by opening the notifications you received. It should have the array > elements. > > On Sun, Jun 30, 2013 at 9:34 PM, Heejoon Chae <[email protected]> > wrote: > > Hi, Chathura, > > > > For some reason, previous xwf gives errors, so I am re-attaching the > scripts > > and xwf. > > I also attached wsdl from the first component > > > > Thank you!, > > Heejoon. > > > > > > > > On Sun, Jun 30, 2013 at 2:01 PM, Chathura Herath <[email protected] > > > > wrote: > >> > >> send me the result xml from your first component as well > >> > >> On Sat, Jun 29, 2013 at 11:26 PM, Heejoon Chae <[email protected]> > >> wrote: > >> > Hi, Chathura, > >> > > >> > I am attaching simplified xwf and related scripts. > >> > > >> > Basically if user input filename which contains list of file names, > >> > 'string_array_test.sh' script generates input for 'foreach component'. > >> > Then, 'local_echo.sh' will do something on each passed file name. > >> > > >> > Thank you for taking your time. > >> > Heejoon. > >> > > >> > > >> > On Sun, Jun 30, 2013 at 12:24 AM, Chathura Herath > >> > <[email protected]> > >> > wrote: > >> >> > >> >> Two questions. > >> >> 1) your services are they public and can i access them. > >> >> 2) Can you send us your xwf file. > >> >> > >> >> If yes to both of the above we can actually load your workflow and > >> >> debug > >> >> this. > >> >> > >> >> If not; > >> >> I looked at the code, the exception you get is because xbaya couldnt > >> >> find the element array. From what i see in the code you need one more > >> >> wrapper element. This is the wrapper element you get when u define in > >> >> the wsdl an element for max occurs unbounded. > >> >> > >> >> I don't want to disappoint you with many trial and errors. you can > try > >> >> this if not give us the services and the xwf so one of us can take a > >> >> look. > >> >> > >> >> > >> >> <ComponentOneOrWhateverOutputParamname> > >> >> <somewrapperelement> > >> >> <val>a</val> > >> >> <val>b</val> > >> >> </somewrapperelement> > >> >> .. > >> >> </ComponentOneOrWhateverOutputParamname> > >> >> > >> >> On Sat, Jun 29, 2013 at 3:38 AM, Heejoon Chae < > [email protected]> > >> >> wrote: > >> >> > Hi, Suresh, > >> >> > > >> >> > Any updates on this? > >> >> > > >> >> > By the way, can you also let me know how I cloud run for-each > >> >> > component > >> >> > on > >> >> > files? Actually, what I want to do is to run my script on several > >> >> > input > >> >> > files(let's say 100 inputs), but actual input files' informations > are > >> >> > listed > >> >> > on a single file instead of getting all the input one by one. > >> >> > > >> >> > So, the input is single file containing all the input file > >> >> > informations > >> >> > looks like, > >> >> > > >> >> > ... > >> >> > http://xxx,xxx,xxx/input1.txt > >> >> > http://xxx,xxx,xxx/input2.txt > >> >> > http://xxx,xxx,xxx/input3.txt > >> >> > ... > >> >> > > >> >> > Thanks! > >> >> > Heejoon. > >> >> > > >> >> > > >> >> > On Tue, Jun 11, 2013 at 10:26 PM, Suresh Marru <[email protected]> > >> >> > wrote: > >> >> >> > >> >> >> Hi Heejoon, > >> >> >> > >> >> >> Normally we use for-each on files, so the way to handle that is > let > >> >> >> all > >> >> >> the output files go into a outputData directory and iterate over > >> >> >> them. > >> >> >> But I > >> >> >> see what you are doing here. Let me try this and get back to you > >> >> >> within > >> >> >> the > >> >> >> next day. > >> >> >> > >> >> >> Thanks for your patience, > >> >> >> Suresh > >> >> >> > >> >> >> On Jun 10, 2013, at 11:46 PM, Heejoon Chae < > [email protected]> > >> >> >> wrote: > >> >> >> > >> >> >> Hi, Airavata users, > >> >> >> > >> >> >> Do you have any advises or experiences for my previous mail about > >> >> >> ForEach > >> >> >> component? > >> >> >> I am still struggling with generating input for ForEach component > in > >> >> >> my > >> >> >> script :/ > >> >> >> Any comment will be helpful to me to use the component :) > >> >> >> > >> >> >> Thank you! > >> >> >> > >> >> >> ---------- Forwarded message ---------- > >> >> >> From: Heejoon Chae <[email protected]> > >> >> >> Date: Fri, Jun 7, 2013 at 5:44 PM > >> >> >> Subject: Re: Question for Airavata For-Each component > >> >> >> To: "[email protected]" <[email protected]> > >> >> >> > >> >> >> > >> >> >> Hi, Lahir, > >> >> >> > >> >> >> I succeeded to use ForEach component with attaching 'Input' > >> >> >> component > >> >> >> in > >> >> >> front of ForEach componet with comma separated value(i.e "a,b,c") > as > >> >> >> input > >> >> >> like in attached figure. ForEach component works well with Input > >> >> >> component > >> >> >> with comma separate value. > >> >> >> > >> >> >> Now I want to mimic what Input component does within my script as > in > >> >> >> another figure. This is required to run ForEach on generated data > >> >> >> not > >> >> >> on > >> >> >> data inputed from user. > >> >> >> > >> >> >> I tired several ways to generate a input for ForEach component in > my > >> >> >> script including what you suggested in previous mail, but I > >> >> >> couldn't. > >> >> >> Please > >> >> >> help me to solve this problem. > >> >> >> > >> >> >> Thank you, > >> >> >> Heejoon. > >> >> >> > >> >> >> > >> >> >> On Wed, Jun 5, 2013 at 11:44 PM, Lahiru Gunathilake > >> >> >> <[email protected]> > >> >> >> wrote: > >> >> >>> > >> >> >>> Following script will be useful for you.. > >> >> >>> > >> >> >>> echo $@ > >> >> >>> echo $* > >> >> >>> echo $# > >> >> >>> for arg; do > >> >> >>> printf '%s\n' "$arg" > >> >> >>> done > >> >> >>> > >> >> >>> > >> >> >>> Lahir > >> >> >>> > >> >> >>> > >> >> >>> On Wed, Jun 5, 2013 at 9:53 AM, 채희준 <[email protected]> wrote: > >> >> >>>> > >> >> >>>> Hi Lahiru, > >> >> >>>> > >> >> >>>> Thank you for your answer. > >> >> >>>> > >> >> >>>> By the way, how to create string array in shell script, so that > I > >> >> >>>> can > >> >> >>>> pass it to ForEach component? > >> >> >>>> > >> >> >>>> Thank you, > >> >> >>>> Heejoon. > >> >> >>>> > >> >> >>>> 2013. 6. 5. 오후 10:44 Lahiru Gunathilake <[email protected]> 작성: > >> >> >>>> > >> >> >>>> Hi Heejoon, > >> >> >>>> > >> >> >>>> We take string array as input but we invoke the script with each > >> >> >>>> element > >> >> >>>> of the string array multiple times, in Foreach we don't pass > whole > >> >> >>>> string > >> >> >>>> array to the application script at once. So you really don't > have > >> >> >>>> to > >> >> >>>> handle > >> >> >>>> a string array in your script. > >> >> >>>> > >> >> >>>> Lahiru > >> >> >>>> > >> >> >>>> > >> >> >>>> On Tue, Jun 4, 2013 at 10:06 PM, Heejoon Chae > >> >> >>>> <[email protected]> > >> >> >>>> wrote: > >> >> >>>>> > >> >> >>>>> Hi, > >> >> >>>>> > >> >> >>>>> I have quick question about Airavata For-Each component. > >> >> >>>>> > >> >> >>>>> It seems that ForEach component takes String array as an input > >> >> >>>>> and > >> >> >>>>> pass > >> >> >>>>> them to next component one by one. > >> >> >>>>> > >> >> >>>>> My question is how to create string array in shell script to > pass > >> >> >>>>> it > >> >> >>>>> to > >> >> >>>>> ForEach component? > >> >> >>>>> > >> >> >>>>> I normally generate string result like > >> >> >>>>> > >> >> >>>>> echo "output=xxx" > >> >> >>>>> > >> >> >>>>> at the end of script and connect it as an input of next > component > >> >> >>>>> in > >> >> >>>>> Airavata workflow to pass the result and let next component > know > >> >> >>>>> the > >> >> >>>>> input > >> >> >>>>> is arrived. > >> >> >>>>> > >> >> >>>>> Thanks, > >> >> >>>>> Heejoon. > >> >> >>>> > >> >> >>>> > >> >> >>>> > >> >> >>>> > >> >> >>>> -- > >> >> >>>> System Analyst Programmer > >> >> >>>> PTI Lab > >> >> >>>> Indiana University > >> >> >>> > >> >> >>> > >> >> >>> > >> >> >>> > >> >> >>> -- > >> >> >>> System Analyst Programmer > >> >> >>> PTI Lab > >> >> >>> Indiana University > >> >> >> > >> >> >> > >> >> >> > >> >> >> <Screen Shot 2013-06-07 at 3.12.05 PM.png><Screen Shot 2013-06-07 > at > >> >> >> 3.11.31 PM.png> > >> >> >> > >> >> >> > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Chathura Herath Ph.D > >> >> http://people.apache.org/~chathura/ > >> >> http://chathurah.blogspot.com/ > >> > > >> > > >> > >> > >> > >> -- > >> Chathura Herath Ph.D > >> http://people.apache.org/~chathura/ > >> http://chathurah.blogspot.com/ > > > > > > > > -- > Chathura Herath Ph.D > http://people.apache.org/~chathura/ > http://chathurah.blogspot.com/ >
