Hi, Chathura, This might be correct one. I also attached slightly modified first script.
<ns:receivedResult infoModelVersion="2.6" xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08";> <ns:notificationSource ns:serviceID="Workflow1_550b44fa_35b7_4c27_b194_eca8c15365ae" ns:experimentID="Workflow1_550b44fa-35b7-4c27-b194-eca8c15365ae" /> <ns:timestamp>2013-07-12T10:56:00.525+09:00</ns:timestamp> <ns:description>output=null</ns:description> <ns:annotation /> <ns:result> <ns:body> <ns1:invokeResponse xmlns:ns1="http://ws.apache.org/axis2/xsd";> <ns:output xsi:type="ns:StringArrayType" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xmlns:ns="http://airavata.apache.org/schemas/gfac/2012/12"; /> </ns1:invokeResponse> </ns:body> </ns:result> <ns:responder ns:serviceID="string_array_test_invoke" ns:workflowID="Workflow1_550b44fa_35b7_4c27_b194_eca8c15365ae" ns:workflowTimestep="0" ns:workflowNodeID="string_array_test_invoke" /> </ns:receivedResult> Thank you, Heejoon. On Fri, Jul 12, 2013 at 10:37 AM, Chathura Herath <[email protected]>wrote: > Forwarding to list > > > ---------- Forwarded message ---------- > From: Chathura Herath <[email protected]> > Date: Mon, Jul 1, 2013 at 9:11 PM > Subject: Re: Question for Airavata For-Each component > To: Suresh Marru <[email protected]> > > > Heejoon, > > This isnt the msg we are looking for. This looks like the first msg. > There should be another msg something like response received which > should have an array of output files. > > On Mon, Jul 1, 2013 at 9:49 AM, Suresh Marru <[email protected]> wrote: > > Saminda, > > > > Chathura preciously knows what needs to be done, can you work with him > and help Heejoon. > > > > Suresh > > > > On Jul 1, 2013, at 12:27 AM, Heejoon Chae <[email protected]> > wrote: > > > >> Yes. It just passed the location of data file that I put to second > component. > >> Here is the xml from first input component. > >> > >> <ns:workflowInvoked infoModelVersion="2.6" > >> xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08";> > >> <ns:notificationSource > ns:serviceID="Workflow1_1e933fac_1c73_4fdf_90a1_3bb3b310d188" > ns:experimentID="Workflow1_1e933fac-1c73-4fdf-90a1-3bb3b310d188" /> > >> <ns:timestamp>2013-07-01T10:22:30.198+09:00</ns:timestamp> > >> > <ns:description>input_file_list=/tmp/input_file_list.txt</ns:description> > >> <ns:annotation /> > >> <ns:initiator > ns:serviceID="Workflow1_1e933fac_1c73_4fdf_90a1_3bb3b310d188" /> > >> </ns:workflowInvoked> > >> > >> Thank you, > >> Heejoon. > >> > >> > >> On Mon, Jul 1, 2013 at 1:14 PM, Chathura Herath <[email protected]> > wrote: > >> I believe Xbaya runs your first component without error, is it not? I > >> was asking for the output xml of the first service . You may find this > >> by opening the notifications you received. It should have the array > >> elements. > >> > >> On Sun, Jun 30, 2013 at 9:34 PM, Heejoon Chae <[email protected]> > wrote: > >> > Hi, Chathura, > >> > > >> > For some reason, previous xwf gives errors, so I am re-attaching the > scripts > >> > and xwf. > >> > I also attached wsdl from the first component > >> > > >> > Thank you!, > >> > Heejoon. > >> > > >> > > >> > > >> > On Sun, Jun 30, 2013 at 2:01 PM, Chathura Herath < > [email protected]> > >> > wrote: > >> >> > >> >> send me the result xml from your first component as well > >> >> > >> >> On Sat, Jun 29, 2013 at 11:26 PM, Heejoon Chae < > [email protected]> > >> >> wrote: > >> >> > Hi, Chathura, > >> >> > > >> >> > I am attaching simplified xwf and related scripts. > >> >> > > >> >> > Basically if user input filename which contains list of file names, > >> >> > 'string_array_test.sh' script generates input for 'foreach > component'. > >> >> > Then, 'local_echo.sh' will do something on each passed file name. > >> >> > > >> >> > Thank you for taking your time. > >> >> > Heejoon. > >> >> > > >> >> > > >> >> > On Sun, Jun 30, 2013 at 12:24 AM, Chathura Herath > >> >> > <[email protected]> > >> >> > wrote: > >> >> >> > >> >> >> Two questions. > >> >> >> 1) your services are they public and can i access them. > >> >> >> 2) Can you send us your xwf file. > >> >> >> > >> >> >> If yes to both of the above we can actually load your workflow and > >> >> >> debug > >> >> >> this. > >> >> >> > >> >> >> If not; > >> >> >> I looked at the code, the exception you get is because xbaya > couldnt > >> >> >> find the element array. From what i see in the code you need one > more > >> >> >> wrapper element. This is the wrapper element you get when u > define in > >> >> >> the wsdl an element for max occurs unbounded. > >> >> >> > >> >> >> I don't want to disappoint you with many trial and errors. you > can try > >> >> >> this if not give us the services and the xwf so one of us can > take a > >> >> >> look. > >> >> >> > >> >> >> > >> >> >> <ComponentOneOrWhateverOutputParamname> > >> >> >> <somewrapperelement> > >> >> >> <val>a</val> > >> >> >> <val>b</val> > >> >> >> </somewrapperelement> > >> >> >> .. > >> >> >> </ComponentOneOrWhateverOutputParamname> > >> >> >> > >> >> >> On Sat, Jun 29, 2013 at 3:38 AM, Heejoon Chae < > [email protected]> > >> >> >> wrote: > >> >> >> > Hi, Suresh, > >> >> >> > > >> >> >> > Any updates on this? > >> >> >> > > >> >> >> > By the way, can you also let me know how I cloud run for-each > >> >> >> > component > >> >> >> > on > >> >> >> > files? Actually, what I want to do is to run my script on > several > >> >> >> > input > >> >> >> > files(let's say 100 inputs), but actual input files' > informations are > >> >> >> > listed > >> >> >> > on a single file instead of getting all the input one by one. > >> >> >> > > >> >> >> > So, the input is single file containing all the input file > >> >> >> > informations > >> >> >> > looks like, > >> >> >> > > >> >> >> > ... > >> >> >> > http://xxx,xxx,xxx/input1.txt > >> >> >> > http://xxx,xxx,xxx/input2.txt > >> >> >> > http://xxx,xxx,xxx/input3.txt > >> >> >> > ... > >> >> >> > > >> >> >> > Thanks! > >> >> >> > Heejoon. > >> >> >> > > >> >> >> > > >> >> >> > On Tue, Jun 11, 2013 at 10:26 PM, Suresh Marru < > [email protected]> > >> >> >> > wrote: > >> >> >> >> > >> >> >> >> Hi Heejoon, > >> >> >> >> > >> >> >> >> Normally we use for-each on files, so the way to handle that > is let > >> >> >> >> all > >> >> >> >> the output files go into a outputData directory and iterate > over > >> >> >> >> them. > >> >> >> >> But I > >> >> >> >> see what you are doing here. Let me try this and get back to > you > >> >> >> >> within > >> >> >> >> the > >> >> >> >> next day. > >> >> >> >> > >> >> >> >> Thanks for your patience, > >> >> >> >> Suresh > >> >> >> >> > >> >> >> >> On Jun 10, 2013, at 11:46 PM, Heejoon Chae < > [email protected]> > >> >> >> >> wrote: > >> >> >> >> > >> >> >> >> Hi, Airavata users, > >> >> >> >> > >> >> >> >> Do you have any advises or experiences for my previous mail > about > >> >> >> >> ForEach > >> >> >> >> component? > >> >> >> >> I am still struggling with generating input for ForEach > component in > >> >> >> >> my > >> >> >> >> script :/ > >> >> >> >> Any comment will be helpful to me to use the component :) > >> >> >> >> > >> >> >> >> Thank you! > >> >> >> >> > >> >> >> >> ---------- Forwarded message ---------- > >> >> >> >> From: Heejoon Chae <[email protected]> > >> >> >> >> Date: Fri, Jun 7, 2013 at 5:44 PM > >> >> >> >> Subject: Re: Question for Airavata For-Each component > >> >> >> >> To: "[email protected]" <[email protected]> > >> >> >> >> > >> >> >> >> > >> >> >> >> Hi, Lahir, > >> >> >> >> > >> >> >> >> I succeeded to use ForEach component with attaching 'Input' > >> >> >> >> component > >> >> >> >> in > >> >> >> >> front of ForEach componet with comma separated value(i.e > "a,b,c") as > >> >> >> >> input > >> >> >> >> like in attached figure. ForEach component works well with > Input > >> >> >> >> component > >> >> >> >> with comma separate value. > >> >> >> >> > >> >> >> >> Now I want to mimic what Input component does within my script > as in > >> >> >> >> another figure. This is required to run ForEach on generated > data > >> >> >> >> not > >> >> >> >> on > >> >> >> >> data inputed from user. > >> >> >> >> > >> >> >> >> I tired several ways to generate a input for ForEach component > in my > >> >> >> >> script including what you suggested in previous mail, but I > >> >> >> >> couldn't. > >> >> >> >> Please > >> >> >> >> help me to solve this problem. > >> >> >> >> > >> >> >> >> Thank you, > >> >> >> >> Heejoon. > >> >> >> >> > >> >> >> >> > >> >> >> >> On Wed, Jun 5, 2013 at 11:44 PM, Lahiru Gunathilake > >> >> >> >> <[email protected]> > >> >> >> >> wrote: > >> >> >> >>> > >> >> >> >>> Following script will be useful for you.. > >> >> >> >>> > >> >> >> >>> echo $@ > >> >> >> >>> echo $* > >> >> >> >>> echo $# > >> >> >> >>> for arg; do > >> >> >> >>> printf '%s\n' "$arg" > >> >> >> >>> done > >> >> >> >>> > >> >> >> >>> > >> >> >> >>> Lahir > >> >> >> >>> > >> >> >> >>> > >> >> >> >>> On Wed, Jun 5, 2013 at 9:53 AM, 채희준 <[email protected]> wrote: > >> >> >> >>>> > >> >> >> >>>> Hi Lahiru, > >> >> >> >>>> > >> >> >> >>>> Thank you for your answer. > >> >> >> >>>> > >> >> >> >>>> By the way, how to create string array in shell script, so > that I > >> >> >> >>>> can > >> >> >> >>>> pass it to ForEach component? > >> >> >> >>>> > >> >> >> >>>> Thank you, > >> >> >> >>>> Heejoon. > >> >> >> >>>> > >> >> >> >>>> 2013. 6. 5. 오후 10:44 Lahiru Gunathilake <[email protected]> > 작성: > >> >> >> >>>> > >> >> >> >>>> Hi Heejoon, > >> >> >> >>>> > >> >> >> >>>> We take string array as input but we invoke the script with > each > >> >> >> >>>> element > >> >> >> >>>> of the string array multiple times, in Foreach we don't pass > whole > >> >> >> >>>> string > >> >> >> >>>> array to the application script at once. So you really don't > have > >> >> >> >>>> to > >> >> >> >>>> handle > >> >> >> >>>> a string array in your script. > >> >> >> >>>> > >> >> >> >>>> Lahiru > >> >> >> >>>> > >> >> >> >>>> > >> >> >> >>>> On Tue, Jun 4, 2013 at 10:06 PM, Heejoon Chae > >> >> >> >>>> <[email protected]> > >> >> >> >>>> wrote: > >> >> >> >>>>> > >> >> >> >>>>> Hi, > >> >> >> >>>>> > >> >> >> >>>>> I have quick question about Airavata For-Each component. > >> >> >> >>>>> > >> >> >> >>>>> It seems that ForEach component takes String array as an > input > >> >> >> >>>>> and > >> >> >> >>>>> pass > >> >> >> >>>>> them to next component one by one. > >> >> >> >>>>> > >> >> >> >>>>> My question is how to create string array in shell script > to pass > >> >> >> >>>>> it > >> >> >> >>>>> to > >> >> >> >>>>> ForEach component? > >> >> >> >>>>> > >> >> >> >>>>> I normally generate string result like > >> >> >> >>>>> > >> >> >> >>>>> echo "output=xxx" > >> >> >> >>>>> > >> >> >> >>>>> at the end of script and connect it as an input of next > component > >> >> >> >>>>> in > >> >> >> >>>>> Airavata workflow to pass the result and let next component > know > >> >> >> >>>>> the > >> >> >> >>>>> input > >> >> >> >>>>> is arrived. > >> >> >> >>>>> > >> >> >> >>>>> Thanks, > >> >> >> >>>>> Heejoon. > >> >> >> >>>> > >> >> >> >>>> > >> >> >> >>>> > >> >> >> >>>> > >> >> >> >>>> -- > >> >> >> >>>> System Analyst Programmer > >> >> >> >>>> PTI Lab > >> >> >> >>>> Indiana University > >> >> >> >>> > >> >> >> >>> > >> >> >> >>> > >> >> >> >>> > >> >> >> >>> -- > >> >> >> >>> System Analyst Programmer > >> >> >> >>> PTI Lab > >> >> >> >>> Indiana University > >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> <Screen Shot 2013-06-07 at 3.12.05 PM.png><Screen Shot > 2013-06-07 at > >> >> >> >> 3.11.31 PM.png> > >> >> >> >> > >> >> >> >> > >> >> >> > > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Chathura Herath Ph.D > >> >> >> http://people.apache.org/~chathura/ > >> >> >> http://chathurah.blogspot.com/ > >> >> > > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Chathura Herath Ph.D > >> >> http://people.apache.org/~chathura/ > >> >> http://chathurah.blogspot.com/ > >> > > >> > > >> > >> > >> > >> -- > >> Chathura Herath Ph.D > >> http://people.apache.org/~chathura/ > >> http://chathurah.blogspot.com/ > >> > > > > > > -- > Chathura Herath Ph.D > http://people.apache.org/~chathura/ > http://chathurah.blogspot.com/ > > > -- > Chathura Herath Ph.D > http://people.apache.org/~chathura/ > http://chathurah.blogspot.com/ >
string_array_test.sh
Description: Bourne shell script
