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On Sun, Jan 3, 2016 at 9:39 PM, Heejoon Chae <[email protected]> wrote: > Hi, > > For some reasons, I cannot see the main page of recent version of PGA. > Is current one being in the middle of update or do I need to set it up > differently? > > After clone from https://github.com/apache/airavata-php-gateway, > I only set the app/config/pga_config.php.template to pga_config.php as I > set before. > > I also checked previous version of PGA that I deployed couple of months > ago and it is working correctly. > > Thank you, > Heejoon. > > On Sun, Jan 3, 2016 at 4:52 PM, Heejoon Chae <[email protected]> > wrote: > >> Okay, I upgraded from 'https://github.com/apache/airavata-php-gateway'. >> >> Please make the name as 'biovlab_snu'. Should this set to admin user name? >> >> Customizing the theme is good addition :) >> >> Thank you, >> Heejoon. >> >> On Sun, Jan 3, 2016 at 4:08 PM, Suresh Marru <[email protected]> wrote: >> >>> Hi Heejoon, >>> >>> Yes please upgrade PGA as well. As well as the default name will not >>> work, pick a name for your gateway. We can assist you in customizing the >>> theme for your gateway. You can look at this as a example of a customized >>> theme - https://seagrid.org/ >>> >>> Suresh >>> >>> On Jan 2, 2016, at 5:19 PM, Heejoon Chae <[email protected]> wrote: >>> >>> Hi Suresh, >>> >>> Should I use latest PGA as well? I only updated Airavata server >>> recently. I am currently using identity server hosted by SciGaP. >>> >>> Is the name of gateway written in this section? >>> /** >>> * PGA Gateway ID >>> */ >>> 'gateway-id' => 'php_reference_gateway', >>> >>> or >>> >>> /** >>> * Tenant Domain >>> */ >>> 'tenant-domain' => 'master.airavata', >>> >>> /** >>> * Tenant admin's username >>> */ >>> 'admin-username' => 'master', >>> >>> /** >>> * Tenant admin's password >>> */ >>> 'admin-password' => 'master', >>> >>> >>> By the way, I have admin permission with default ID 'master' if the >>> admin you mentioned is same as this. >>> >>> Briefly, I am using locally hosted lastest Airavata server with 1 or 2 >>> month old locally running PGA, and use identity server hosted by SciGaP. I >>> registered own computing resource locally with SLURM job submission >>> interface. >>> >>> Thank you! >>> Heejoon. >>> >>> >>> On Sun, Jan 3, 2016 at 12:02 AM, Suresh Marru <[email protected]> wrote: >>> >>>> Hi Heejoon, >>>> >>>> If you have latest Airavata (master), then you can use the user >>>> interface in PGA to create credential store tokens. Only admins can >>>> register tokens. Are you using your own identity server or the one hosted >>>> by SciGaP? Can you briefly tell what is the name of your gateway so we can >>>> set up a tenant for you and make you an admin for it. >>>> >>>> Suresh >>>> >>>> On Jan 2, 2016, at 3:29 AM, Heejoon Chae <[email protected]> >>>> wrote: >>>> >>>> Hi, >>>> >>>> I have succeeded to build recent version. Now I have compiled class >>>> located at >>>> >>>> >>>> 'org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest.class' >>>> >>>> How can I run that to generate credential token? >>>> >>>> I tried >>>> 'java >>>> org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest', >>>> but it says >>>> >>>> >>>> ############################################################################################# >>>> [heechae@biobrainpool test-classes]$ java >>>> org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest >>>> Error: A JNI error has occurred, please check your installation and try >>>> again >>>> Exception in thread "main" java.lang.NoClassDefFoundError: >>>> org/apache/airavata/common/exception/ApplicationSettingsException >>>> at java.lang.Class.getDeclaredMethods0(Native Method) >>>> at java.lang.Class.privateGetDeclaredMethods(Class.java:2701) >>>> at java.lang.Class.privateGetMethodRecursive(Class.java:3048) >>>> at java.lang.Class.getMethod0(Class.java:3018) >>>> at java.lang.Class.getMethod(Class.java:1784) >>>> at >>>> sun.launcher.LauncherHelper.validateMainClass(LauncherHelper.java:544) >>>> at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:526) >>>> Caused by: java.lang.ClassNotFoundException: >>>> org.apache.airavata.common.exception.ApplicationSettingsException >>>> at java.net.URLClassLoader.findClass(URLClassLoader.java:381) >>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:424) >>>> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331) >>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:357) >>>> ... 7 more >>>> >>>> ############################################################################################ >>>> >>>> >>>> it seems it cannot find dependent classes. >>>> >>>> I manually copied all required classes to same location and tried to >>>> run, but at the end I still got >>>> >>>> >>>> ############################################################################################## >>>> Exception in thread "main" java.lang.NoClassDefFoundError: >>>> org/slf4j/LoggerFactory >>>> at org.apache.airavata.common.utils.DBUtil.<clinit>(DBUtil.java:43) >>>> at >>>> org.apache.airavata.credential.store.store.impl.db.SSHCredentialTest.main(SSHCredentialTest.java:50) >>>> Caused by: java.lang.ClassNotFoundException: org.slf4j.LoggerFactory >>>> at java.net.URLClassLoader.findClass(URLClassLoader.java:381) >>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:424) >>>> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331) >>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:357) >>>> ... 2 more >>>> >>>> ############################################################################################## >>>> >>>> Thanks, >>>> Heejoon. >>>> >>>> On Tue, Dec 22, 2015 at 10:34 AM, Supun Nakandala < >>>> [email protected]> wrote: >>>> >>>>> The build should work fine now. >>>>> >>>>> On Mon, Dec 21, 2015 at 8:17 PM, Heejoon Chae <[email protected]> >>>>> wrote: >>>>> >>>>>> Unfortunately, the compile fails at certain point, >>>>>> >>>>>> [INFO] >>>>>> ------------------------------------------------------------------------ >>>>>> [INFO] BUILD FAILURE >>>>>> [INFO] >>>>>> ------------------------------------------------------------------------ >>>>>> [INFO] Total time: 7:41.368s >>>>>> [INFO] Finished at: Tue Dec 22 10:05:36 KST 2015 >>>>>> [INFO] Final Memory: 95M/3073M >>>>>> [INFO] >>>>>> ------------------------------------------------------------------------ >>>>>> [ERROR] Failed to execute goal >>>>>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile >>>>>> (default-compile) on project airavata-client-samples: Compilation >>>>>> failure: >>>>>> Compilation failure: >>>>>> [ERROR] >>>>>> /data/project/mcpg/airavata/test/airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/CancelExperiments.java:[63,55] >>>>>> incompatible types: java.lang.String cannot be converted to >>>>>> org.apache.airavata.model.security.AuthzToken >>>>>> [ERROR] >>>>>> /data/project/mcpg/airavata/test/airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java:[38,65] >>>>>> incompatible types: java.lang.String cannot be converted to >>>>>> org.apache.airavata.model.security.AuthzToken >>>>>> [ERROR] >>>>>> /data/project/mcpg/airavata/test/airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/tools/RegisterSampleApplications.java:[193,81] >>>>>> incompatible types: java.lang.String cannot be converted to >>>>>> org.apache.airavata.model.security.AuthzToken >>>>>> >>>>>> Thanks, >>>>>> Heejoon. >>>>>> >>>>>> On Tue, Dec 22, 2015 at 10:02 AM, Heejoon Chae < >>>>>> [email protected]> wrote: >>>>>> >>>>>>> Sorry, I found my JAVA_HOME set to different location even I use >>>>>>> java 1.8. >>>>>>> >>>>>>> Now it seems building goes correctly! >>>>>>> >>>>>>> Thank you! >>>>>>> Heejoon. >>>>>>> >>>>>>> On Tue, Dec 22, 2015 at 9:56 AM, Heejoon Chae < >>>>>>> [email protected]> wrote: >>>>>>> >>>>>>>> Yes. I am using java 1.8 >>>>>>>> >>>>>>>> [heechae@biobrainpool airavata]$ which java >>>>>>>> /packages/jdk1.8.0_65/bin/java >>>>>>>> >>>>>>>> Thanks, >>>>>>>> Heejoon. >>>>>>>> >>>>>>>> On Tue, Dec 22, 2015 at 9:46 AM, Chathuri Wimalasena < >>>>>>>> [email protected]> wrote: >>>>>>>> >>>>>>>>> Hi Heejoon, >>>>>>>>> >>>>>>>>> I hope you are using java 1.8. >>>>>>>>> >>>>>>>>> Thanks.. >>>>>>>>> Chathuri >>>>>>>>> >>>>>>>>> On Mon, Dec 21, 2015 at 7:08 PM, Heejoon Chae < >>>>>>>>> [email protected]> wrote: >>>>>>>>> >>>>>>>>>> Hi, Supun, >>>>>>>>>> >>>>>>>>>> Thank you for fixing that. I updated and do mvn clean install. >>>>>>>>>> I got some errors like, >>>>>>>>>> >>>>>>>>>> INFO] BUILD FAILURE >>>>>>>>>> [INFO] >>>>>>>>>> ------------------------------------------------------------------------ >>>>>>>>>> [INFO] Total time: 7.754s >>>>>>>>>> [INFO] Finished at: Tue Dec 22 09:05:21 KST 2015 >>>>>>>>>> [INFO] Final Memory: 36M/1931M >>>>>>>>>> [INFO] >>>>>>>>>> ------------------------------------------------------------------------ >>>>>>>>>> [ERROR] Failed to execute goal >>>>>>>>>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile >>>>>>>>>> (default-compile) on project airavata-data-models: Fatal error >>>>>>>>>> compiling: >>>>>>>>>> invalid target release: 1.8 -> [Help 1] >>>>>>>>>> [ERROR] >>>>>>>>>> [ERROR] To see the full stack trace of the errors, re-run Maven >>>>>>>>>> with the -e switch. >>>>>>>>>> [ERROR] Re-run Maven using the -X switch to enable full debug >>>>>>>>>> logging. >>>>>>>>>> [ERROR] >>>>>>>>>> [ERROR] For more information about the errors and possible >>>>>>>>>> solutions, please read the following articles: >>>>>>>>>> [ERROR] [Help 1] >>>>>>>>>> http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException >>>>>>>>>> [ERROR] >>>>>>>>>> [ERROR] After correcting the problems, you can resume the build >>>>>>>>>> with the command >>>>>>>>>> [ERROR] mvn <goals> -rf :airavata-data-models >>>>>>>>>> >>>>>>>>>> Thanks, >>>>>>>>>> Heejoon. >>>>>>>>>> >>>>>>>>>> On Tue, Dec 22, 2015 at 12:35 AM, Supun Nakandala < >>>>>>>>>> [email protected]> wrote: >>>>>>>>>> >>>>>>>>>>> Hi Heejoon, >>>>>>>>>>> >>>>>>>>>>> There was an issue in the pom files and I fixed it now. Can you >>>>>>>>>>> check whether your build is working now >>>>>>>>>>> >>>>>>>>>>> On Sun, Dec 20, 2015 at 7:52 PM, Heejoon Chae < >>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>> >>>>>>>>>>>> I got following as well, >>>>>>>>>>>> >>>>>>>>>>>> [INFO] Scanning for projects... >>>>>>>>>>>> [ERROR] The build could not read 2 projects -> [Help 1] >>>>>>>>>>>> [ERROR] >>>>>>>>>>>> [ERROR] The project >>>>>>>>>>>> org.apache.airavata:data-manager-cpi:0.16-SNAPSHOT >>>>>>>>>>>> (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-cpi/pom.xml) >>>>>>>>>>>> has 1 error >>>>>>>>>>>> [ERROR] Non-resolvable parent POM: Could not find artifact >>>>>>>>>>>> org.apache.airavata:airavata:pom:0.16-SNAPSHOT and >>>>>>>>>>>> 'parent.relativePath' >>>>>>>>>>>> points at wrong local POM @ line 5, column 13 -> [Help 2] >>>>>>>>>>>> [ERROR] >>>>>>>>>>>> [ERROR] The project >>>>>>>>>>>> org.apache.airavata:data-manager-core:0.16-SNAPSHOT >>>>>>>>>>>> (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-core/pom.xml) >>>>>>>>>>>> has 1 error >>>>>>>>>>>> [ERROR] Non-resolvable parent POM: Could not find artifact >>>>>>>>>>>> org.apache.airavata:airavata:pom:0.16-SNAPSHOT and >>>>>>>>>>>> 'parent.relativePath' >>>>>>>>>>>> points at wrong local POM @ line 5, column 13 -> [Help 2] >>>>>>>>>>>> [ERROR] >>>>>>>>>>>> [ERROR] To see the full stack trace of the errors, re-run Maven >>>>>>>>>>>> with the -e switch. >>>>>>>>>>>> [ERROR] Re-run Maven using the -X switch to enable full debug >>>>>>>>>>>> logging. >>>>>>>>>>>> [ERROR] >>>>>>>>>>>> [ERROR] For more information about the errors and possible >>>>>>>>>>>> solutions, please read the following articles: >>>>>>>>>>>> [ERROR] [Help 1] >>>>>>>>>>>> http://cwiki.apache.org/confluence/display/MAVEN/ProjectBuildingException >>>>>>>>>>>> [ERROR] [Help 2] >>>>>>>>>>>> http://cwiki.apache.org/confluence/display/MAVEN/UnresolvableModelException >>>>>>>>>>>> >>>>>>>>>>>> Thanks, >>>>>>>>>>>> Heejoon. >>>>>>>>>>>> >>>>>>>>>>>> On Mon, Dec 21, 2015 at 9:48 AM, Chathuri Wimalasena < >>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>> >>>>>>>>>>>>> Instead of building only credential store module, could you >>>>>>>>>>>>> build from airavata source root. Credential store module depends >>>>>>>>>>>>> on >>>>>>>>>>>>> airavata-server-configuration and other jars. That should >>>>>>>>>>>>> resolve your issue.. >>>>>>>>>>>>> >>>>>>>>>>>>> Thanks. >>>>>>>>>>>>> Chathuri >>>>>>>>>>>>> >>>>>>>>>>>>> On Sun, Dec 20, 2015 at 7:45 PM, Heejoon Chae < >>>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>>> >>>>>>>>>>>>>> Hi, Chathuri, >>>>>>>>>>>>>> >>>>>>>>>>>>>> Thank you for the explanation. >>>>>>>>>>>>>> >>>>>>>>>>>>>> I cloned the git and tried to compile credential-store with >>>>>>>>>>>>>> 'mvn clean install -Dmaven.test.skip=true' with mvn 3.0 and java >>>>>>>>>>>>>> 8 but got >>>>>>>>>>>>>> following errors. >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> ############################################################################################################### >>>>>>>>>>>>>> Downloaded: >>>>>>>>>>>>>> http://repo1.maven.org/maven2/org/apache/derby/derbyclient/10.11.1.1/derbyclient-10.11.1.1.jar >>>>>>>>>>>>>> (571 KB at 2.8 KB/sec) >>>>>>>>>>>>>> [INFO] >>>>>>>>>>>>>> ------------------------------------------------------------------------ >>>>>>>>>>>>>> [INFO] BUILD FAILURE >>>>>>>>>>>>>> [INFO] >>>>>>>>>>>>>> ------------------------------------------------------------------------ >>>>>>>>>>>>>> [INFO] Total time: 3:53.576s >>>>>>>>>>>>>> [INFO] Finished at: Mon Dec 21 09:38:34 KST 2015 >>>>>>>>>>>>>> [INFO] Final Memory: 11M/1931M >>>>>>>>>>>>>> [INFO] >>>>>>>>>>>>>> ------------------------------------------------------------------------ >>>>>>>>>>>>>> [ERROR] Failed to execute goal on project >>>>>>>>>>>>>> airavata-credential-store: Could not resolve dependencies for >>>>>>>>>>>>>> project >>>>>>>>>>>>>> org.apache.airavata:airavata-credential-store:jar:0.16-SNAPSHOT: >>>>>>>>>>>>>> The >>>>>>>>>>>>>> following artifacts could not be resolved: >>>>>>>>>>>>>> org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT, >>>>>>>>>>>>>> org.apache.airavata:airavata-server-configuration:jar:0.16-SNAPSHOT, >>>>>>>>>>>>>> org.apache.airavata:airavata-commons:jar:0.16-SNAPSHOT: Could >>>>>>>>>>>>>> not find >>>>>>>>>>>>>> artifact >>>>>>>>>>>>>> org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT >>>>>>>>>>>>>> in >>>>>>>>>>>>>> apache.snapshots (http://repository.apache.org/snapshots) -> >>>>>>>>>>>>>> [Help 1] >>>>>>>>>>>>>> [ERROR] >>>>>>>>>>>>>> [ERROR] To see the full stack trace of the errors, re-run >>>>>>>>>>>>>> Maven with the -e switch. >>>>>>>>>>>>>> [ERROR] Re-run Maven using the -X switch to enable full debug >>>>>>>>>>>>>> logging. >>>>>>>>>>>>>> [ERROR] >>>>>>>>>>>>>> [ERROR] For more information about the errors and possible >>>>>>>>>>>>>> solutions, please read the following articles: >>>>>>>>>>>>>> [ERROR] [Help 1] >>>>>>>>>>>>>> http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException >>>>>>>>>>>>>> >>>>>>>>>>>>>> ############################################################################################################### >>>>>>>>>>>>>> >>>>>>>>>>>>>> Any suggestion? >>>>>>>>>>>>>> >>>>>>>>>>>>>> Thanks, >>>>>>>>>>>>>> Heejoon. >>>>>>>>>>>>>> >>>>>>>>>>>>>> On Fri, Dec 18, 2015 at 9:29 PM, Chathuri Wimalasena < >>>>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>>>> >>>>>>>>>>>>>>> Hi Heejoon, >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> You need to set up a valid credential store token in the >>>>>>>>>>>>>>> credential store (experiment-catalog database has tables >>>>>>>>>>>>>>> related to >>>>>>>>>>>>>>> credential store). Same credential store token needs to be set >>>>>>>>>>>>>>> in gateway >>>>>>>>>>>>>>> profiles. This token is used when airavata ssh to resource, >>>>>>>>>>>>>>> input staging >>>>>>>>>>>>>>> and all the remote connections with the resource. Credential >>>>>>>>>>>>>>> store token is >>>>>>>>>>>>>>> the identifier for SSH credential object which contains valid >>>>>>>>>>>>>>> SSH keys. >>>>>>>>>>>>>>> Refer this code >>>>>>>>>>>>>>> https://github.com/apache/airavata/blob/master/modules/credential-store/credential-store-service/src/test/java/org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest.java. >>>>>>>>>>>>>>> There are API methods to generate SSH keys as well. You can use >>>>>>>>>>>>>>> any of the >>>>>>>>>>>>>>> two methods. >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Thanks.. >>>>>>>>>>>>>>> Chathuri >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> On Fri, Dec 18, 2015 at 12:02 AM, Heejoon Chae < >>>>>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Hi, Suresh, >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Thank you for the help. It correctly parses the email. >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Now I have another error caused by 'credential token' as >>>>>>>>>>>>>>>> below, >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> ERROR] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, >>>>>>>>>>>>>>>> processId: PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8, >>>>>>>>>>>>>>>> taskId: >>>>>>>>>>>>>>>> TASK_fc9dd43b-f0ea-4e6c-bd92-c5daa698257b type: >>>>>>>>>>>>>>>> DATA_STAGING,:- output >>>>>>>>>>>>>>>> staging failed, reason: Provided credential store token is not >>>>>>>>>>>>>>>> valid. >>>>>>>>>>>>>>>> Please provide the correct credential store token >>>>>>>>>>>>>>>> [INFO] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, >>>>>>>>>>>>>>>> processId: PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8 :- >>>>>>>>>>>>>>>> Process status >>>>>>>>>>>>>>>> changed FAILED -> FAILED >>>>>>>>>>>>>>>> [INFO] Publishing status to rabbitmq... >>>>>>>>>>>>>>>> [ERROR] GFac Worker throws an exception >>>>>>>>>>>>>>>> org.apache.airavata.gfac.core.GFacException: Error while >>>>>>>>>>>>>>>> staging output data >>>>>>>>>>>>>>>> at >>>>>>>>>>>>>>>> org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:478) >>>>>>>>>>>>>>>> at >>>>>>>>>>>>>>>> org.apache.airavata.gfac.impl.GFacEngineImpl.runProcessOutflow(GFacEngineImpl.java:393) >>>>>>>>>>>>>>>> at >>>>>>>>>>>>>>>> org.apache.airavata.gfac.impl.GFacWorker.runProcessOutflow(GFacWorker.java:172) >>>>>>>>>>>>>>>> at >>>>>>>>>>>>>>>> org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:105) >>>>>>>>>>>>>>>> at >>>>>>>>>>>>>>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) >>>>>>>>>>>>>>>> at >>>>>>>>>>>>>>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) >>>>>>>>>>>>>>>> at java.lang.Thread.run(Thread.java:745) >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> I actually set 'false' for storing credential in the >>>>>>>>>>>>>>>> 'airavata-server.properties' file as bellow >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> start.credential.store=false >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> but it seems still they are active. >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Thank you, >>>>>>>>>>>>>>>> Heejoon. >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> On Fri, Dec 18, 2015 at 12:42 AM, Suresh Marru < >>>>>>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> Hi Heejoon, >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> You will need to configure your email within >>>>>>>>>>>>>>>>> gfac-config.yaml (you will find it in the bin directory). >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> If you can add your email to: >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> - jobManagerType: SLURM >>>>>>>>>>>>>>>>> commandOutputParser: >>>>>>>>>>>>>>>>> org.apache.airavata.gfac.impl.job.SlurmOutputParser >>>>>>>>>>>>>>>>> emailParser: >>>>>>>>>>>>>>>>> org.apache.airavata.gfac.monitor.email.parser.SLURMEmailParser >>>>>>>>>>>>>>>>> resourceEmailAddresses: >>>>>>>>>>>>>>>>> - SDSC Admin <[email protected]> # comet >>>>>>>>>>>>>>>>> - [email protected] # stampede >>>>>>>>>>>>>>>>> - [email protected] >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> Thanks, >>>>>>>>>>>>>>>>> Suresh >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> > On Dec 16, 2015, at 6:33 PM, Heejoon Chae < >>>>>>>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > Hi, Suresh, >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > I am using one month old version of PGA and Airavata >>>>>>>>>>>>>>>>> server. Both were recent version at that time. >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > apache-airavata-server-0.16-SNAPSHOT >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > Thank you, >>>>>>>>>>>>>>>>> > Heejoon. >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > On Thu, Dec 17, 2015 at 8:28 AM, Suresh Marru < >>>>>>>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>>>>>>> > Hi Heejoon, >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > Are you using Airavata 0.15 or 0.16 for this purpose? >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > Suresh >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> >> On Dec 16, 2015, at 5:38 PM, Heejoon Chae < >>>>>>>>>>>>>>>>> [email protected]> wrote: >>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>> >> Hi, >>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>> >> I have succeeded run job with SLURM. >>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>> >> Now, the job monitoring through email causes some >>>>>>>>>>>>>>>>> errors as bellow. >>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>> >> It seems the Airavata server correctly log in the email >>>>>>>>>>>>>>>>> account and bring email list, but it could not parse it >>>>>>>>>>>>>>>>> correctly. >>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>> ################################################################################# >>>>>>>>>>>>>>>>> >> [ERROR] [EJM]: Error parsing email message >>>>>>>>>>>>>>>>> =====================================> >>>>>>>>>>>>>>>>> >> org.apache.airavata.common.exception.AiravataException: >>>>>>>>>>>>>>>>> [EJM]: Couldn't identify Resource job manager type from >>>>>>>>>>>>>>>>> address >>>>>>>>>>>>>>>>> [email protected] >>>>>>>>>>>>>>>>> >> at >>>>>>>>>>>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.getJobMonitorType(EmailBasedMonitor.java:160) >>>>>>>>>>>>>>>>> >> at >>>>>>>>>>>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.parse(EmailBasedMonitor.java:144) >>>>>>>>>>>>>>>>> >> at >>>>>>>>>>>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.processMessages(EmailBasedMonitor.java:239) >>>>>>>>>>>>>>>>> >> at >>>>>>>>>>>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.run(EmailBasedMonitor.java:208) >>>>>>>>>>>>>>>>> >> at java.lang.Thread.run(Thread.java:745) >>>>>>>>>>>>>>>>> >> [ERROR] FROM: [email protected] >>>>>>>>>>>>>>>>> >> [ERROR] TO: [email protected] >>>>>>>>>>>>>>>>> >> [ERROR] SUBJECT: SLURM Job_id=116 Name=A1514598207 >>>>>>>>>>>>>>>>> Ended, Run time 00:00:01, COMPLETED, ExitCode 0 >>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>> ################################################################################# >>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>> >> Thank you, >>>>>>>>>>>>>>>>> >> Heejoon. >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> -- >>>>>>>>>>> Thank you >>>>>>>>>>> Supun Nakandala >>>>>>>>>>> Dept. Computer Science and Engineering >>>>>>>>>>> University of Moratuwa >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>>> >>>>> -- >>>>> Thank you >>>>> Supun Nakandala >>>>> Dept. Computer Science and Engineering >>>>> University of Moratuwa >>>>> >>>> >>>> >>>> >>> >>> >> > -- Thank you Supun Nakandala Dept. Computer Science and Engineering University of Moratuwa
