Since the master is undergoing testing, we have been testing against it. But very soon we will get off the master and do the development on master so we should not get constant build issues on master.
Suresh > On Dec 21, 2015, at 8:34 PM, Supun Nakandala <[email protected]> > wrote: > > The build should work fine now. > > On Mon, Dec 21, 2015 at 8:17 PM, Heejoon Chae <[email protected] > <mailto:[email protected]>> wrote: > Unfortunately, the compile fails at certain point, > > [INFO] > ------------------------------------------------------------------------ > [INFO] BUILD FAILURE > [INFO] > ------------------------------------------------------------------------ > [INFO] Total time: 7:41.368s > [INFO] Finished at: Tue Dec 22 10:05:36 KST 2015 > [INFO] Final Memory: 95M/3073M > [INFO] > ------------------------------------------------------------------------ > [ERROR] Failed to execute goal > org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) > on project airavata-client-samples: Compilation failure: Compilation failure: > [ERROR] > /data/project/mcpg/airavata/test/airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/CancelExperiments.java:[63,55] > incompatible types: java.lang.String cannot be converted to > org.apache.airavata.model.security.AuthzToken > [ERROR] > /data/project/mcpg/airavata/test/airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java:[38,65] > incompatible types: java.lang.String cannot be converted to > org.apache.airavata.model.security.AuthzToken > [ERROR] > /data/project/mcpg/airavata/test/airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/tools/RegisterSampleApplications.java:[193,81] > incompatible types: java.lang.String cannot be converted to > org.apache.airavata.model.security.AuthzToken > > Thanks, > Heejoon. > > On Tue, Dec 22, 2015 at 10:02 AM, Heejoon Chae <[email protected] > <mailto:[email protected]>> wrote: > Sorry, I found my JAVA_HOME set to different location even I use java 1.8. > > Now it seems building goes correctly! > > Thank you! > Heejoon. > > On Tue, Dec 22, 2015 at 9:56 AM, Heejoon Chae <[email protected] > <mailto:[email protected]>> wrote: > Yes. I am using java 1.8 > > [heechae@biobrainpool airavata]$ which java > /packages/jdk1.8.0_65/bin/java > > Thanks, > Heejoon. > > On Tue, Dec 22, 2015 at 9:46 AM, Chathuri Wimalasena <[email protected] > <mailto:[email protected]>> wrote: > Hi Heejoon, > > I hope you are using java 1.8. > > Thanks.. > Chathuri > > On Mon, Dec 21, 2015 at 7:08 PM, Heejoon Chae <[email protected] > <mailto:[email protected]>> wrote: > Hi, Supun, > > Thank you for fixing that. I updated and do mvn clean install. > I got some errors like, > > INFO] BUILD FAILURE > [INFO] > ------------------------------------------------------------------------ > [INFO] Total time: 7.754s > [INFO] Finished at: Tue Dec 22 09:05:21 KST 2015 > [INFO] Final Memory: 36M/1931M > [INFO] > ------------------------------------------------------------------------ > [ERROR] Failed to execute goal > org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) > on project airavata-data-models: Fatal error compiling: invalid target > release: 1.8 -> [Help 1] > [ERROR] > [ERROR] To see the full stack trace of the errors, re-run Maven with the -e > switch. > [ERROR] Re-run Maven using the -X switch to enable full debug logging. > [ERROR] > [ERROR] For more information about the errors and possible solutions, please > read the following articles: > [ERROR] [Help 1] > http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException > <http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException> > [ERROR] > [ERROR] After correcting the problems, you can resume the build with the > command > [ERROR] mvn <goals> -rf :airavata-data-models > > Thanks, > Heejoon. > > On Tue, Dec 22, 2015 at 12:35 AM, Supun Nakandala <[email protected] > <mailto:[email protected]>> wrote: > Hi Heejoon, > > There was an issue in the pom files and I fixed it now. Can you check whether > your build is working now > > On Sun, Dec 20, 2015 at 7:52 PM, Heejoon Chae <[email protected] > <mailto:[email protected]>> wrote: > I got following as well, > > [INFO] Scanning for projects... > [ERROR] The build could not read 2 projects -> [Help 1] > [ERROR] > [ERROR] The project org.apache.airavata:data-manager-cpi:0.16-SNAPSHOT > (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-cpi/pom.xml) > has 1 error > [ERROR] Non-resolvable parent POM: Could not find artifact > org.apache.airavata:airavata:pom:0.16-SNAPSHOT and 'parent.relativePath' > points at wrong local POM @ line 5, column 13 -> [Help 2] > [ERROR] > [ERROR] The project org.apache.airavata:data-manager-core:0.16-SNAPSHOT > (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-core/pom.xml) > has 1 error > [ERROR] Non-resolvable parent POM: Could not find artifact > org.apache.airavata:airavata:pom:0.16-SNAPSHOT and 'parent.relativePath' > points at wrong local POM @ line 5, column 13 -> [Help 2] > [ERROR] > [ERROR] To see the full stack trace of the errors, re-run Maven with the -e > switch. > [ERROR] Re-run Maven using the -X switch to enable full debug logging. > [ERROR] > [ERROR] For more information about the errors and possible solutions, please > read the following articles: > [ERROR] [Help 1] > http://cwiki.apache.org/confluence/display/MAVEN/ProjectBuildingException > <http://cwiki.apache.org/confluence/display/MAVEN/ProjectBuildingException> > [ERROR] [Help 2] > http://cwiki.apache.org/confluence/display/MAVEN/UnresolvableModelException > <http://cwiki.apache.org/confluence/display/MAVEN/UnresolvableModelException> > > Thanks, > Heejoon. > > On Mon, Dec 21, 2015 at 9:48 AM, Chathuri Wimalasena <[email protected] > <mailto:[email protected]>> wrote: > Instead of building only credential store module, could you build from > airavata source root. Credential store module depends on > airavata-server-configuration and other jars. That should resolve your issue.. > > Thanks. > Chathuri > > On Sun, Dec 20, 2015 at 7:45 PM, Heejoon Chae <[email protected] > <mailto:[email protected]>> wrote: > Hi, Chathuri, > > Thank you for the explanation. > > I cloned the git and tried to compile credential-store with 'mvn clean > install -Dmaven.test.skip=true' with mvn 3.0 and java 8 but got following > errors. > > > ############################################################################################################### > Downloaded: > http://repo1.maven.org/maven2/org/apache/derby/derbyclient/10.11.1.1/derbyclient-10.11.1.1.jar > > <http://repo1.maven.org/maven2/org/apache/derby/derbyclient/10.11.1.1/derbyclient-10.11.1.1.jar> > (571 KB at 2.8 KB/sec) > [INFO] > ------------------------------------------------------------------------ > [INFO] BUILD FAILURE > [INFO] > ------------------------------------------------------------------------ > [INFO] Total time: 3:53.576s > [INFO] Finished at: Mon Dec 21 09:38:34 KST 2015 > [INFO] Final Memory: 11M/1931M > [INFO] > ------------------------------------------------------------------------ > [ERROR] Failed to execute goal on project airavata-credential-store: Could > not resolve dependencies for project > org.apache.airavata:airavata-credential-store:jar:0.16-SNAPSHOT: The > following artifacts could not be resolved: > org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT, > org.apache.airavata:airavata-server-configuration:jar:0.16-SNAPSHOT, > org.apache.airavata:airavata-commons:jar:0.16-SNAPSHOT: Could not find > artifact > org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT in > apache.snapshots (http://repository.apache.org/snapshots > <http://repository.apache.org/snapshots>) -> [Help 1] > [ERROR] > [ERROR] To see the full stack trace of the errors, re-run Maven with the -e > switch. > [ERROR] Re-run Maven using the -X switch to enable full debug logging. > [ERROR] > [ERROR] For more information about the errors and possible solutions, please > read the following articles: > [ERROR] [Help 1] > http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException > > <http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException> > ############################################################################################################### > > Any suggestion? > > Thanks, > Heejoon. > > On Fri, Dec 18, 2015 at 9:29 PM, Chathuri Wimalasena <[email protected] > <mailto:[email protected]>> wrote: > Hi Heejoon, > > You need to set up a valid credential store token in the credential store > (experiment-catalog database has tables related to credential store). Same > credential store token needs to be set in gateway profiles. This token is > used when airavata ssh to resource, input staging and all the remote > connections with the resource. Credential store token is the identifier for > SSH credential object which contains valid SSH keys. Refer this code > https://github.com/apache/airavata/blob/master/modules/credential-store/credential-store-service/src/test/java/org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest.java > > <https://github.com/apache/airavata/blob/master/modules/credential-store/credential-store-service/src/test/java/org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest.java>. > There are API methods to generate SSH keys as well. You can use any of the > two methods. > > Thanks.. > Chathuri > > > > On Fri, Dec 18, 2015 at 12:02 AM, Heejoon Chae <[email protected] > <mailto:[email protected]>> wrote: > Hi, Suresh, > > Thank you for the help. It correctly parses the email. > > Now I have another error caused by 'credential token' as below, > > ERROR] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: > PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8, taskId: > TASK_fc9dd43b-f0ea-4e6c-bd92-c5daa698257b type: DATA_STAGING,:- output > staging failed, reason: Provided credential store token is not valid. Please > provide the correct credential store token > [INFO] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: > PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8 :- Process status changed FAILED > -> FAILED > [INFO] Publishing status to rabbitmq... > [ERROR] GFac Worker throws an exception > org.apache.airavata.gfac.core.GFacException: Error while staging output data > at > org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:478) > at > org.apache.airavata.gfac.impl.GFacEngineImpl.runProcessOutflow(GFacEngineImpl.java:393) > at > org.apache.airavata.gfac.impl.GFacWorker.runProcessOutflow(GFacWorker.java:172) > at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:105) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > > I actually set 'false' for storing credential in the > 'airavata-server.properties' file as bellow > > start.credential.store=false > > but it seems still they are active. > > Thank you, > Heejoon. > > On Fri, Dec 18, 2015 at 12:42 AM, Suresh Marru <[email protected] > <mailto:[email protected]>> wrote: > Hi Heejoon, > > You will need to configure your email within gfac-config.yaml (you will find > it in the bin directory). > > If you can add your email to: > > - jobManagerType: SLURM > commandOutputParser: org.apache.airavata.gfac.impl.job.SlurmOutputParser > emailParser: org.apache.airavata.gfac.monitor.email.parser.SLURMEmailParser > resourceEmailAddresses: > - SDSC Admin <[email protected] <mailto:[email protected]>> > # comet > - [email protected] > <mailto:[email protected]> # stampede > - [email protected] <mailto:[email protected]> > > > Thanks, > Suresh > > > On Dec 16, 2015, at 6:33 PM, Heejoon Chae <[email protected] > > <mailto:[email protected]>> wrote: > > > > Hi, Suresh, > > > > I am using one month old version of PGA and Airavata server. Both were > > recent version at that time. > > > > apache-airavata-server-0.16-SNAPSHOT > > > > Thank you, > > Heejoon. > > > > > > > > On Thu, Dec 17, 2015 at 8:28 AM, Suresh Marru <[email protected] > > <mailto:[email protected]>> wrote: > > Hi Heejoon, > > > > Are you using Airavata 0.15 or 0.16 for this purpose? > > > > Suresh > > > >> On Dec 16, 2015, at 5:38 PM, Heejoon Chae <[email protected] > >> <mailto:[email protected]>> wrote: > >> > >> Hi, > >> > >> I have succeeded run job with SLURM. > >> > >> Now, the job monitoring through email causes some errors as bellow. > >> > >> It seems the Airavata server correctly log in the email account and bring > >> email list, but it could not parse it correctly. > >> > >> ################################################################################# > >> [ERROR] [EJM]: Error parsing email message > >> =====================================> > >> org.apache.airavata.common.exception.AiravataException: [EJM]: Couldn't > >> identify Resource job manager type from address [email protected] > >> <mailto:[email protected]> > >> at > >> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.getJobMonitorType(EmailBasedMonitor.java:160) > >> at > >> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.parse(EmailBasedMonitor.java:144) > >> at > >> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.processMessages(EmailBasedMonitor.java:239) > >> at > >> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.run(EmailBasedMonitor.java:208) > >> at java.lang.Thread.run(Thread.java:745) > >> [ERROR] FROM: [email protected] <mailto:[email protected]> > >> [ERROR] TO: [email protected] <mailto:[email protected]> > >> [ERROR] SUBJECT: SLURM Job_id=116 Name=A1514598207 Ended, Run time > >> 00:00:01, COMPLETED, ExitCode 0 > >> ################################################################################# > >> > >> Thank you, > >> Heejoon. > > > > > > > > > > > > > > -- > Thank you > Supun Nakandala > Dept. Computer Science and Engineering > University of Moratuwa > > > > > > > > > -- > Thank you > Supun Nakandala > Dept. Computer Science and Engineering > University of Moratuwa
