Prateek, I tried recreating your query using the: Compressed web file (Notify by email) option, and was able to execute it.
Please let me know if you are still having trouble. Thank you, Elena From: [email protected] [mailto:[email protected]] On Behalf Of prateek b Sent: Wednesday, February 02, 2011 11:37 AM To: [email protected] Subject: [BioMart Users] Fwd: Your BioMart results are ready Hello, I tried many times but I am unable to download the data. Following is the description of the dataset I am trying to download. Dataset HapMap Population CEU - Utah residents with Northern and Western European ancestry from the CEPH collection Filters [None selected] Attributes chromosome position strand marker id alleles reference allele genotyping center genotyping platform reference allele reference allele frequency reference allele count other allele other allele frequency other allele count total allele count Thank you, -Prateek Bondala PhD Student Bio Medical Informatics Department University of Utah ---------- Forwarded message ---------- From: <[email protected]<mailto:[email protected]>> Date: Tue, Feb 1, 2011 at 10:28 PM Subject: Your BioMart results are ready To: [email protected]<mailto:[email protected]> Your results file FAILED. Here is the reason why: Error during query execution: Lost connection to MySQL server during query Trace begun at /usr/local/biomart-perl/lib/BioMart/Dataset/TableSet.pm line 241 BioMart::Dataset::TableSet::_fillAttributeTableWith('BioMart::Dataset::TableSet=HASH(0x2b54b2cc7d80)', 'BioMart::Query=HASH(0x2b54b684be50)', 'BioMart::ResultTable=HASH(0x2b54b685b580)', 6400, 6400) called at /usr/local/biomart-perl/lib/BioMart/Dataset/TableSet.pm line 124 BioMart::Dataset::TableSet::_getResultTable('BioMart::Dataset::TableSet=HASH(0x2b54b2cc7d80)', 'query', 'BioMart::Query=HASH(0x2b54b684be50)', 'batch_start', 6400, 'table', 'BioMart::ResultTable=HASH(0x2b54b685b580)', 'batch_size', 6400) called at /usr/local/biomart-perl/lib/BioMart/DatasetI.pm line 1170 BioMart::DatasetI::getResultTable('BioMart::Dataset::TableSet=HASH(0x2b54b2cc7d80)', 'batch_start', 6400, 'query', 'BioMart::Query=HASH(0x2b54b684be50)', 'table', 'BioMart::ResultTable=HASH(0x2b54b685b580)', 'batch_size', 6400) called at /usr/local/biomart-perl/lib/BioMart/ResultTable.pm line 195 BioMart::ResultTable::_getBatch('BioMart::ResultTable=HASH(0x2b54b685b580)') called at /usr/local/biomart-perl/lib/BioMart/ResultTable.pm line 247 BioMart::ResultTable::hasMoreRows('BioMart::ResultTable=HASH(0x2b54b685b580)') called at /usr/local/biomart-perl/lib/BioMart/AttributeTable.pm line 169 BioMart::AttributeTable::nextRow('BioMart::ResultTable=HASH(0x2b54b685b580)') called at /usr/local/biomart-perl/lib/BioMart/ResultTable.pm line 256 BioMart::ResultTable::nextRow('BioMart::ResultTable=HASH(0x2b54b685b580)') called at /usr/local/biomart-perl/lib/BioMart/Formatter/CSV.pm line 83 BioMart::Formatter::CSV::nextRow('BioMart::Formatter::CSV=HASH(0x2b54b68c2460)') called at /usr/local/biomart-perl/lib/BioMart/QueryRunner.pm line 259 BioMart::QueryRunner::printResults('BioMart::QueryRunner=HASH(0x2b54b48baa30)', 'BioMart::Web::Zlib=GLOB(0x2b54b62c8d90)', undef) called at /usr/local/biomart-perl/lib/BioMart/Web.pm line 2304 eval {...} at /usr/local/biomart-perl/lib/BioMart/Web.pm line 2291 eval {...} at /usr/local/biomart-perl/lib/BioMart/Web.pm line 2197 BioMart::Web::handle_request('BioMart::Web=HASH(0x2b54b4e574e0)', 'CGI=HASH(0x2b54b68c26c0)') called at /usr/local/biomart-perl/cgi-bin/martview line 96 eval {...} at /usr/local/biomart-perl/cgi-bin/martview line 95 ModPerl::ROOT::ModPerl::Registry::usr_local_biomart_2dperl_cgi_2dbin_martview::handler('Apache2::RequestRec=SCALAR(0x2b54b253f840)') called at /opt/perl-5.8.8/lib/vendor_perl/5.8.8/x86_64-linux/ModPerl/RegistryCooker.pm line 204 eval {...} at /opt/perl-5.8.8/lib/vendor_perl/5.8.8/x86_64-linux/ModPerl/RegistryCooker.pm line 204 ModPerl::RegistryCooker::run('ModPerl::Registry=HASH(0x2b54b67c1990)') called at /opt/perl-5.8.8/lib/vendor_perl/5.8.8/x86_64-linux/ModPerl/RegistryCooker.pm line 170 ModPerl::RegistryCooker::default_handler('ModPerl::Registry=HASH(0x2b54b67c1990)') called at /opt/perl-5.8.8/lib/vendor_perl/5.8.8/x86_64-linux/ModPerl/Registry.pm line 31 ModPerl::Registry::handler('ModPerl::Registry', 'Apache2::RequestRec=SCALAR(0x2b54b253f840)') called at -e line 0 eval {...} at -e line 0 Please try your request again, or alternatively contact your service provider including a copy of this email and quoting this reference: martquery_0201222459_903.txt.gz.
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