Hi, I am retrieving 5'UTR sequences for Mus musculus, but I keep getting FAILED results, like this one forwarded. Please help me with the request.
Thanks, Xiaofeng ---------- Forwarded message ---------- From: <[email protected]> Date: Mon, Mar 12, 2012 at 11:43 AM Subject: Your BioMart results are ready To: [email protected] Your results file FAILED. Here is the reason why: Error during query execution: Lost connection to MySQL server during query Trace begun at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm line 241 BioMart::Dataset::TableSet::_fillAttributeTableWith('BioMart::Dataset::TableSet=HASH(0x169b44f0)', 'BioMart::Query=HASH(0x328c9168)', 'BioMart::ResultTable=HASH(0x328ca1a0)', 6400, 6400) called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm line 124 BioMart::Dataset::TableSet::_getResultTable('BioMart::Dataset::TableSet=HASH(0x169b44f0)', 'query', 'BioMart::Query=HASH(0x328c9168)', 'batch_start', 6400, 'table', 'BioMart::ResultTable=HASH(0x328ca1a0)', 'batch_size', 6400) called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/DatasetI.pm line 1170 BioMart::DatasetI::getResultTable('BioMart::Dataset::TableSet=HASH(0x169b44f0)', 'batch_start', 6400, 'query', 'BioMart::Query=HASH(0x328c9168)', 'table', 'BioMart::ResultTable=HASH(0x328ca1a0)', 'batch_size', 6400) called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/ResultTable.pm line 195 BioMart::ResultTable::_getBatch('BioMart::ResultTable=HASH(0x328ca1a0)') called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/ResultTable.pm line 247 BioMart::ResultTable::hasMoreRows('BioMart::ResultTable=HASH(0x328ca1a0)') called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Dataset/GenomicSequence.pm line 992 BioMart::Dataset::GenomicSequence::_getResultTable('BioMart::Dataset::GenomicSequence=HASH(0xfe39b58)', 'query', 'BioMart::Query=HASH(0x328cb3a0)', 'batch_start', 573, 'table', 'BioMart::ResultTable=HASH(0x3287f0f8)', 'batch_size', 6400) called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/DatasetI.pm line 1170 BioMart::DatasetI::getResultTable('BioMart::Dataset::GenomicSequence=HASH(0xfe39b58)', 'batch_start', 573, 'query', 'BioMart::Query=HASH(0x328cb3a0)', 'table', 'BioMart::ResultTable=HASH(0x3287f0f8)', 'batch_size', 6400) called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/ResultTable.pm line 195 BioMart::ResultTable::_getBatch('BioMart::ResultTable=HASH(0x3287f0f8)') called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/ResultTable.pm line 247 BioMart::ResultTable::hasMoreRows('BioMart::ResultTable=HASH(0x3287f0f8)') called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/AttributeTable.pm line 169 BioMart::AttributeTable::nextRow('BioMart::ResultTable=HASH(0x3287f0f8)') called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/ResultTable.pm line 256 BioMart::ResultTable::nextRow('BioMart::ResultTable=HASH(0x3287f0f8)') called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Formatter/FASTA.pm line 70 BioMart::Formatter::FASTA::nextRow('BioMart::Formatter::FASTA=HASH(0x328c8f10)') called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm line 248 BioMart::QueryRunner::printResults('BioMart::QueryRunner=HASH(0x328c68d0)', 'BioMart::Web::Zlib=GLOB(0x328c9150)', undef) called at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Web.pm line 2308 eval {...} at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Web.pm line 2295 eval {...} at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Web.pm line 2201 BioMart::Web::handle_request('BioMart::Web=HASH(0x3285ff40)', 'CGI=HASH(0x32899a20)') called at /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview line 96 eval {...} at /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview line 95 ModPerl::ROOT::ModPerl::Registry::srv_biomart_server_biomart_2eorg_biomart_2dperl_cgi_2dbin_martview::handler('Apache2::RequestRec=SCALAR(0x32872cf0)') called at /usr/lib/perl5/ModPerl/RegistryCooker.pm line 204 eval {...} at /usr/lib/perl5/ModPerl/RegistryCooker.pm line 204 ModPerl::RegistryCooker::run('ModPerl::Registry=HASH(0x32864f98)') called at /usr/lib/perl5/ModPerl/RegistryCooker.pm line 170 ModPerl::RegistryCooker::default_handler('ModPerl::Registry=HASH(0x32864f98)') called at /usr/lib/perl5/ModPerl/Registry.pm line 31 ModPerl::Registry::handler('ModPerl::Registry', 'Apache2::RequestRec=SCALAR(0x32872cf0)') called at -e line 0 eval {...} at -e line 0 Please try your request again, or alternatively contact your service provider including a copy of this email and quoting this reference: martquery_0312114200_445.txt.gz. _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
