Thanks Syed, When I ran the 'ant clean' the first time, it deleted the dist directory and the only place I could find the biomart-server.sh script is now in the scripts directory located at $BIOMART_HOME
bash-3.2$ ant clean Buildfile: build.xml -load.properties: clean: BUILD SUCCESSFUL Total time: 0 seconds Here's a list of the BIOMART_HOME directory contents. "ant clean" really changed the directory structure from what I was previously used to (i.e. dist/scripts, etc.). because there is now a "plugins" directory is why I thought maybe "svn update" updated my original rc3 installation to rc4. However, even in the rc4 install that we have, there is still the dist directory so I don't know what's going on. ant.properties build_test.xml build.xml conf ext images lib plugins registry scripts src start test testdata voldemort web -----Original Message----- From: Syed Haider [mailto:[email protected]] Sent: Wednesday, February 09, 2011 4:08 PM To: Estrella, Heather Cc: [email protected] Subject: Re: [BioMart Users] svn update for rc3 get compiler error when run ant Heather, 1- please send me the console output when you run 'ant' 2- to start/stop biomart server, the commands are: ./dist/scripts/biomart-server.sh stop ./dist/scripts/biomart-server.sh start thats from the dist directory. let me know if that helps. Syed On 09/02/2011 23:56, Estrella, Heather wrote: > Thanks Syed, > > That got me past the ant problem. However, it looks like running svn > update automatically took my rc3 code to rc4. > > I'm trying to start my biomart server back up using " > ./scripts/biomart-server.sh start" and I get the following error: > ** ERROR: > /lscratch/apps/BioMart8/rc3/trunk/scripts/biomart-start.jar is not > readable! > > This jar file doesn't exist in the scripts directory. It isn't found > anywhere in the installation path. > > Here is a list of what is in the scripts directory: > biomart-server.bat > build.sh > fasta.sh > jetty.bat > Jetty-Service.exe > martconfigurator.bat > martrunner.bat > prunmgr.exe > runSoakTest.sh > biomart-server.sh > fasta.bat > generate-password.sh > jetty-service.conf > launch.sh > martconfigurator.sh > martrunner.sh > prunsrv.exe > test.sh > > Also, can you please point me to the documentation is located? I'm kinda > running blind. > > Thanks, > Heather > > -----Original Message----- > From: Syed Haider [mailto:[email protected]] > Sent: Wednesday, February 09, 2011 3:47 PM > To: Estrella, Heather > Cc: [email protected] > Subject: Re: [BioMart Users] svn update for rc3 get compiler error when > run ant > > Heather, > > try: > ant clean > and then > ant > > also, please make sure you are running the above commands from the > following directory: > > /lscratch/apps/BioMart8/trunk_jan_26/trunk/ > > thanks > Syed > > On 09/02/2011 23:36, Estrella, Heather wrote: >> Hi, >> >> I'm trying to upgrade my RC3 installation to the new RC3 code that > fixes the copy/paste URL bug. I ran >> >> svn update >> >> ant >> >> When I ran ant, I received the following compiler error: >> >> Buildfile: build.xml >> >> -load.properties: >> >> -init: >> >> compile.main: >> >> [javac] Compiling 114 source files to > /lscratch/apps/BioMart8/trunk_jan_26/trunk/build/classes/main >> >> [javac] ---------- >> >> [javac] 1. ERROR in > /lscratch/apps/BioMart8/trunk_jan_26/trunk/src/org/biomart/configurator/ > utils/McGuiUtils.java (at line 1) >> >> [javac] package org.biomart.configurator.utils; >> >> [javac] ^^ >> >> [javac] The type Enum is not generic; it cannot be parameterized > with arguments<McGuiUtils> >> >> [javac] ---------- >> >> [javac] 1 problem (1 error) >> >> BUILD FAILED >> >> /lscratch/apps/BioMart8/trunk_jan_26/trunk/build.xml:32: Compile > failed; see the compiler error output for details. >> >> This is the portion of the McGuiType.java script that is having issues >> >> ... >> >> /** >> >> * this class should not be used for web, should only be used for >> >> * MartConfigurator GUI. >> >> */ >> >> public enum McGuiUtils { >> >> INSTANCE; >> >> private McGuiType guiType; >> >> ... >> >> What am I missing? >> >> Thanks, >> >> Heather >> _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
