You need to run:
ant
after ant clean.
then it will recreate the dist/
and then run:
./dist/scripts/biomart-server.sh start
On 10/02/2011 00:07, Estrella, Heather wrote:
Thanks Syed,
When I ran the 'ant clean' the first time, it deleted the dist directory
and the only place I could find the biomart-server.sh script is now in
the scripts directory located at $BIOMART_HOME
bash-3.2$ ant clean
Buildfile: build.xml
-load.properties:
clean:
BUILD SUCCESSFUL
Total time: 0 seconds
Here's a list of the BIOMART_HOME directory contents. "ant clean" really
changed the directory structure from what I was previously used to (i.e.
dist/scripts, etc.). because there is now a "plugins" directory is why I
thought maybe "svn update" updated my original rc3 installation to rc4.
However, even in the rc4 install that we have, there is still the dist
directory so I don't know what's going on.
ant.properties
build_test.xml
build.xml
conf
ext
images
lib
plugins
registry
scripts
src
start
test
testdata
voldemort
web
-----Original Message-----
From: Syed Haider [mailto:[email protected]]
Sent: Wednesday, February 09, 2011 4:08 PM
To: Estrella, Heather
Cc: [email protected]
Subject: Re: [BioMart Users] svn update for rc3 get compiler error when
run ant
Heather,
1- please send me the console output when you run 'ant'
2- to start/stop biomart server, the commands are:
./dist/scripts/biomart-server.sh stop
./dist/scripts/biomart-server.sh start
thats from the dist directory. let me know if that helps.
Syed
On 09/02/2011 23:56, Estrella, Heather wrote:
Thanks Syed,
That got me past the ant problem. However, it looks like running svn
update automatically took my rc3 code to rc4.
I'm trying to start my biomart server back up using "
./scripts/biomart-server.sh start" and I get the following error:
** ERROR:
/lscratch/apps/BioMart8/rc3/trunk/scripts/biomart-start.jar is not
readable!
This jar file doesn't exist in the scripts directory. It isn't found
anywhere in the installation path.
Here is a list of what is in the scripts directory:
biomart-server.bat
build.sh
fasta.sh
jetty.bat
Jetty-Service.exe
martconfigurator.bat
martrunner.bat
prunmgr.exe
runSoakTest.sh
biomart-server.sh
fasta.bat
generate-password.sh
jetty-service.conf
launch.sh
martconfigurator.sh
martrunner.sh
prunsrv.exe
test.sh
Also, can you please point me to the documentation is located? I'm
kinda
running blind.
Thanks,
Heather
-----Original Message-----
From: Syed Haider [mailto:[email protected]]
Sent: Wednesday, February 09, 2011 3:47 PM
To: Estrella, Heather
Cc: [email protected]
Subject: Re: [BioMart Users] svn update for rc3 get compiler error
when
run ant
Heather,
try:
ant clean
and then
ant
also, please make sure you are running the above commands from the
following directory:
/lscratch/apps/BioMart8/trunk_jan_26/trunk/
thanks
Syed
On 09/02/2011 23:36, Estrella, Heather wrote:
Hi,
I'm trying to upgrade my RC3 installation to the new RC3 code that
fixes the copy/paste URL bug. I ran
svn update
ant
When I ran ant, I received the following compiler error:
Buildfile: build.xml
-load.properties:
-init:
compile.main:
[javac] Compiling 114 source files to
/lscratch/apps/BioMart8/trunk_jan_26/trunk/build/classes/main
[javac] ----------
[javac] 1. ERROR in
/lscratch/apps/BioMart8/trunk_jan_26/trunk/src/org/biomart/configurator/
utils/McGuiUtils.java (at line 1)
[javac] package org.biomart.configurator.utils;
[javac] ^^
[javac] The type Enum is not generic; it cannot be
parameterized
with arguments<McGuiUtils>
[javac] ----------
[javac] 1 problem (1 error)
BUILD FAILED
/lscratch/apps/BioMart8/trunk_jan_26/trunk/build.xml:32: Compile
failed; see the compiler error output for details.
This is the portion of the McGuiType.java script that is having
issues
...
/**
* this class should not be used for web, should only be used for
* MartConfigurator GUI.
*/
public enum McGuiUtils {
INSTANCE;
private McGuiType guiType;
...
What am I missing?
Thanks,
Heather
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