Hi Syed, Thanks a lot for the patch!
If I understood it right I'll to configure the icgc3.xml from scratch, isn't it? Jorge --- El jue, 10/2/11, Syed Haider <[email protected]> escribió: > De: Syed Haider <[email protected]> > Asunto: Re: [BioMart Users] ICGC mart, queries never get to finish > Para: "Jorge Zamora" <[email protected]> > CC: "[email protected]" <[email protected]> > Fecha: jueves, 10 de febrero, 2011 22:07 > Hi Jorge, > > the patch is now available, please svn update your code, > followed by ant. > > You would need to start from icgc3 xml again and add your > dataset. > > Let us know how you get on with this, > > thanks for your patience, > Syed > > On 09/02/2011 22:59, Syed Haider wrote: > > Hi Jorge, > > > > We have managed to fix this and the patch should > become available tomorrow. > > > > Best, > > Syed > > > > On 09/02/2011 10:46, Jorge Zamora wrote: > >> Hello, > >> > >> I'm experiencing that queries in the Quick > Interface work but when I > >> query using the other two interfaces the query > seems to run forever. > >> This happens when in query my local mart but not > when I use other ICGC > >> marts. > >> > >> This a example of one of the queries that never > finish: > >> > >> > >> <?xml version="1.0" > encoding="UTF-8"?><!DOCTYPE Query><Query > client="" > >> processor="TSV" limit="-1" > header="1"><Dataset name="snp_cnioCLL" > >> config="snp_3_1_1"><Attribute > name="cancertype"/><Attribute > >> name="chromosome"/><Attribute > >> > name="simple_somatic_mutation__dm_mutation_id"/><Attribute > >> > name="donor_id"/></Dataset></Query> > >> > >> > >> anybody experiencing something similar? I'm using > biomart 0.8 rc4 > >> > >> Thanks > >> Jorge > >> > >> **NOTA DE CONFIDENCIALIDAD** Este correo > electrónico, y en su caso los ficheros adjuntos, pueden > contener información protegida para el uso exclusivo de su > destinatario. Se prohíbe la distribución, reproducción o > cualquier otro tipo de transmisión por parte de otra > persona que no sea el destinatario. Si usted recibe por > error este correo, se ruega comunicarlo al remitente y > borrar el mensaje recibido. > >> **CONFIDENTIALITY NOTICE** This email > communication and any attachments may contain confidential > and privileged information for the sole use of the > designated recipient named above. Distribution, reproduction > or any other use of this transmission by any party other > than the intended recipient is prohibited. If you are not > the intended recipient please contact the sender and delete > all copies. > >> > >> _______________________________________________ > >> Users mailing list > >> [email protected] > >> https://lists.biomart.org/mailman/listinfo/users > > _______________________________________________ > > Users mailing list > > [email protected] > > https://lists.biomart.org/mailman/listinfo/users > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
