Re: [BioMart Users] ICGC mart, queries never get to finish

[Syed Haider]

Correct Jorge, you will recoonfigure only your dataset specific 
properties again.

Syed
On 11/02/2011 07:28, Jorge Zamora Berna wrote:
Hi Syed,

Thanks a lot for the patch!

If I understood it right I'll to configure the icgc3.xml from scratch, isn't it?

Jorge



--- El jue, 10/2/11, Syed Haider<syed.hai...@oicr.on.ca>  escribió:

De: Syed Haider<syed.hai...@oicr.on.ca>
Asunto: Re: [BioMart Users] ICGC mart, queries never get to finish
Para: "Jorge Zamora"<jazam...@cnio.es>
CC: "users@biomart.org"<users@biomart.org>
Fecha: jueves, 10 de febrero, 2011 22:07
Hi Jorge,

the patch is now available, please svn update your code,
followed by ant.

You would need to start from icgc3 xml again and add your
dataset.

Let us know how you get on with this,

thanks for your patience,
Syed

On 09/02/2011 22:59, Syed Haider wrote:
Hi Jorge,

We have managed to fix this and the patch should
become available tomorrow.

Best,
Syed

On 09/02/2011 10:46, Jorge Zamora wrote:
Hello,

I'm experiencing that queries in the Quick
Interface work but when I
query using the other two interfaces the query
seems to run forever.
This happens when in query my local mart but not
when I use other ICGC
marts.

This a example of one of the queries that never
finish:


<?xml version="1.0"
encoding="UTF-8"?><!DOCTYPE Query><Query
client=""
processor="TSV" limit="-1"
header="1"><Dataset name="snp_cnioCLL"
config="snp_3_1_1"><Attribute
name="cancertype"/><Attribute
name="chromosome"/><Attribute

name="simple_somatic_mutation__dm_mutation_id"/><Attribute

name="donor_id"/></Dataset></Query>


anybody experiencing something similar? I'm using
biomart 0.8 rc4

Thanks
Jorge

**NOTA DE CONFIDENCIALIDAD** Este correo
electrónico, y en su caso los ficheros adjuntos, pueden
contener información protegida para el uso exclusivo de su
destinatario. Se prohíbe la distribución, reproducción o
cualquier otro tipo de transmisión por parte de otra
persona que no sea el destinatario. Si usted recibe por
error este correo, se ruega comunicarlo al remitente y
borrar el mensaje recibido.
**CONFIDENTIALITY NOTICE** This email
communication and any attachments may contain confidential
and privileged information for the sole use of the
designated recipient named above. Distribution, reproduction
or any other use of this transmission by any party other
than the intended recipient is prohibited. If you are not
the intended recipient please contact the sender and delete
all copies.

_______________________________________________
Users mailing list
Users@biomart.org
https://lists.biomart.org/mailman/listinfo/users
_______________________________________________
Users mailing list
Users@biomart.org
https://lists.biomart.org/mailman/listinfo/users
_______________________________________________
Users mailing list
Users@biomart.org
https://lists.biomart.org/mailman/listinfo/users




_______________________________________________
Users mailing list
Users@biomart.org
https://lists.biomart.org/mailman/listinfo/users