Hi Jorge,
so when you add either icgc mart or vega_mart, do these appear in the
left section under "Source" tab ?
Syed
On 28/02/2011 14:00, Jorge Zamora wrote:
Hi syed,
I started a new portal and tried to add our ICGC mart to it.
Also I just found out that the 'Portal' section does not get updated
even selecting vega_mart_61 for instance.
any hint?
Jorge
Syed Haider wrote:
Jorge,
are you adding your mart to icgc3 registry file OR you are starting a
new portal and your mart to it ?
is it just your mart that you cannot add successfully or (eg
vega_mart_61 from martdb.ensembl.org:5316) is not adding to your
portal either ?
thanks
Syed
On 28/02/2011 12:01, Jorge Zamora wrote:
Hi,
I'm trying to connect to my own ICGC mart from martconfigurator adding
it as a 'new source'. However the mart configuration is not picked it
up. This is what I have done:
-Open martconfigurator.
-Add a new source
-Choose 'Relational Mart' as Type, type host, pot, password.
-Click on our ICGC mart database and choose 'Yes' when prompted to use
the exiting configuration so the seven metatables are selected.
-Then I realized that our ICGC mart configuration is not showing up on
the 'Portal' section of martconfigurator. It seems that the mart
configuration it's not picked up!!
-Then I go own with the OpenID: create a group and an user within it
assigned to a openid (already registeted and tested in our ICGC mart
configuration XML file)
-Save the XML so it's path is set in the biomart.properties file (as
well as the key file).
-Deploy
-Log in successfully with the Open ID
-But then, as I was supecting, I don't see anything... not trace of the
configuration on the web browser.
Can you see something obvious I'm doing wrong?
Many thanks,
Jorge
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