Mahantesha, >From what I understand, you are using Ensembl Plants, (dataset ?), selecting >RAP-IDS in the "ID List limit" filter and entering a list of genes.. To get the sequence of 5'UTR, In the Attributes section called Sequences , select 5' UTR and any Header information that would be useful (Ensembl Gene ID, etc).
Please let me know if that works. If not, can you please provide me with additional details including Database, Dataset, Filters, and Attributes you are using. The easiest way to do that, if, once you have set the query – press the XML button on the top of the page, and copy all the information from there. Thank you, Elena From: Mahantesha <[email protected]<mailto:[email protected]>> Date: Fri, 18 Mar 2011 01:23:40 -0400 To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [BioMart Users] About 5'UTR sequence Dear sir/madam, Please can you help me to get the 5'UTR sequences from the biomart. I have RAP-DB - IRGSP/RAP genes dataset of 1.2,3kb of upstream sequences. When I am giving these genes ID its not getting from the set,from filter i am selecting RAP IDS,please help in this. -- Thanks, With regards, Mahantesha Naik B.N. Research Scholar UAS(B)/NCBS Bangalore-560 065,Karnataka, India.
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