Hi Junjun,
I've fully installed rc5, reconfigured icgc3.xml and It makes no
difference. It seems to me that the icgc3.xml that comes with the
installation has a different configuration compared to the one displayed
at http://dcc.icgc.org/, at least in the filter section of the
'ANYLISIS' and 'DATABASE SEARCH'.
Also, is there any graphic library that we should additionally install
to visualize the histograms/bars when resquesting KEGG pathways? I just
ask this since we have set up our local ICGC mart in two independent
machines. In both cases we tell there are differences in the
configuration compared to http://dcc.icgc.org/. However one only machine
displays KEGG pathways. That's why we're where suspecting there're
missing graphic libraries.
Thanks,
Jorge
Junjun Zhang wrote:
Hi Jorge,
We were trying to reproduce the problems at our side, but couldn’t get
what you experienced. The problem might be caused by running incorrect
UPDATE. We are developing a command line UPDATE tool for ICGC members,
the tool will automate the operation as much as possible to minimize
the chance of such type of errors.
Best,
Junjun
On 11-04-05 5:35 AM, "Jorge Zamora" <[email protected]> wrote:
Hello,
We have realized of some differences from our local ICGC mart with
respect to the web menu for other countries. We're using the icgc xml
that came with rc5. Specifically we're missing the following fields in
the web site:
- 'Gene type' and 'Mutation type' in ANALYSIS within both the
'Affected
Genes' and 'Affected Pathways' sections.
- 'Gene type' in DATABASE SEARCH within 'Genes' section.
is there any extra configuration needed in martconfigurator to display
this information?
Thanks
Jorge
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