Hi Junjun,
You mean the web server or the actual mart database.
Thanks,
Jorge
Junjun Zhang wrote:
Hi Jorge,
There is no additional installation is needed.
From what you describe I am not quite sure what exactly the problem
with KEGG pathways. Is there any chance I can access your server?
Thanks,
Junjun
On 11-04-07 5:25 AM, "Jorge Zamora" <[email protected]> wrote:
Hi Junjun,
I've fully installed rc5, reconfigured icgc3.xml and It makes no
difference. It seems to me that the icgc3.xml that comes with the
installation has a different configuration compared to the one
displayed
at http://dcc.icgc.org/, at least in the filter section of the
'ANYLISIS' and 'DATABASE SEARCH'.
Also, is there any graphic library that we should additionally install
to visualize the histograms/bars when resquesting KEGG pathways? I
just
ask this since we have set up our local ICGC mart in two independent
machines. In both cases we tell there are differences in the
configuration compared to http://dcc.icgc.org/. However one only
machine
displays KEGG pathways. That's why we're where suspecting there're
missing graphic libraries.
Thanks,
Jorge
Junjun Zhang wrote:
> Hi Jorge,
>
> We were trying to reproduce the problems at our side, but
couldn’t get
> what you experienced. The problem might be caused by running
incorrect
> UPDATE. We are developing a command line UPDATE tool for ICGC
members,
> the tool will automate the operation as much as possible to minimize
> the chance of such type of errors.
>
> Best,
> Junjun
>
>
> On 11-04-05 5:35 AM, "Jorge Zamora" <[email protected]> wrote:
>
> Hello,
>
> We have realized of some differences from our local ICGC mart with
> respect to the web menu for other countries. We're using the icgc xml
> that came with rc5. Specifically we're missing the following
fields in
> the web site:
>
> - 'Gene type' and 'Mutation type' in ANALYSIS within both the
> 'Affected
> Genes' and 'Affected Pathways' sections.
> - 'Gene type' in DATABASE SEARCH within 'Genes' section.
>
> is there any extra configuration needed in martconfigurator to
display
> this information?
>
> Thanks
> Jorge
>
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