On Tue, 26 Apr 2011, Joachim Baran wrote:
Date: Tue, 26 Apr 2011 13:11:08 -0400
From: Joachim Baran <[email protected]>
To: Zhiliang <[email protected]>, "[email protected]" <[email protected]>
Subject: Re: [BioMart Users] Biomart local setup - load source problem
Hi!
On 11-04-26 1:00 PM, "Zhiliang" <[email protected]> wrote:
I have setup a local copy of the Biomart 0.8. With martconfigurator.sh
I can load multiple data sources for "snp". When I try to load
"Ensembl", I could load only 1 species relatively quickly. However, when
I try to load more than 1 species, or add 1 species after a successful
load (1 species), it would take *forever* (I waited at times over couple
hours), regardless if I choose to let it calculate links between species
not not.
Can you please describe how you click through the interface so that we
can replicate the problem?
For example, you could say: "Click on 'Add Source', select Type: 'URL',
..."
Thanks,
Joachim
(1) In "File" window, under *Source, click "+Add Source"
-> An "add data source" window pop up
(2) In "Add Data Source" window, under "Marts", click select "ensembl"
-> A list of species appear on the right column "Datasets"
(3) In "Add Data Source" window, under "Datasets", click unselect
not-wanted species [a suggestion: could the default be all 'un-selected'?]
-> if I select 1 species, it loads, and I can start the server etc
-> if I select 2 or more species, it "runs" forever
-> if after a successful load of a species, I select 1 speciess, it
"runs" forever
I hope these details are sufficient?
Thank you,
Zhiliang
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