Thanks Yong,
I used "URL" in the "add data source" window (if I choose "RDBMS" I got
"database connection error" - with anonymous/myEmail_pass).
How is your "new release" available - should I wait for next release
version or i can get it somewhere?
Yes my previously describe problem still persists.
Zhiliang
Date: Tue, 26 Apr 2011 14:27:03 -0400
From: Yong Liang <[email protected]>
To: Zhiliang <[email protected]>, Joachim Baran <[email protected]>
Cc: "[email protected]" <[email protected]>
Subject: Re: [BioMart Users] Biomart local setup - load source problem
Hi Zhiliang,
Do you still have the problem? I followed your steps and selected multiple
species for "URL" mart. It worked fine for me. Could you let me know what
species you are choosing? In the "add data source" dialog, do you choose
"URL" or "RDBMS"?
(3) In "Add Data Source" window, under "Datasets", click unselect
not-wanted species [a suggestion: could the default be all 'un-selected'?]
In the new release, you can do select/un-select all.
Thanks,
Yong
On 11-04-26 1:25 PM, "Zhiliang" <[email protected]> wrote:
On Tue, 26 Apr 2011, Joachim Baran wrote:
Date: Tue, 26 Apr 2011 13:11:08 -0400
From: Joachim Baran <[email protected]>
To: Zhiliang <[email protected]>, "[email protected]"
<[email protected]>
Subject: Re: [BioMart Users] Biomart local setup - load source problem
Hi!
On 11-04-26 1:00 PM, "Zhiliang" <[email protected]> wrote:
I have setup a local copy of the Biomart 0.8. With martconfigurator.sh
I can load multiple data sources for "snp". When I try to load
"Ensembl", I could load only 1 species relatively quickly. However, when
I try to load more than 1 species, or add 1 species after a successful
load (1 species), it would take *forever* (I waited at times over couple
hours), regardless if I choose to let it calculate links between species
not not.
Can you please describe how you click through the interface so that we
can replicate the problem?
For example, you could say: "Click on 'Add Source', select Type: 'URL',
..."
Thanks,
Joachim
(1) In "File" window, under *Source, click "+Add Source"
-> An "add data source" window pop up
(2) In "Add Data Source" window, under "Marts", click select "ensembl"
-> A list of species appear on the right column "Datasets"
(3) In "Add Data Source" window, under "Datasets", click unselect
not-wanted species [a suggestion: could the default be all 'un-selected'?]
-> if I select 1 species, it loads, and I can start the server etc
-> if I select 2 or more species, it "runs" forever
-> if after a successful load of a species, I select 1 speciess, it
"runs" forever
I hope these details are sufficient?
Thank you,
Zhiliang
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