Hi Zhiliang, The "biomart-server.sh stop" command will look at the biomart.pid file inside dist directory and kill that process. It may be that the process was already killed but the pid file still remained.
I'm not sure how Xming works, but the "biomart-server.sh start" script should be launching the BioMart process as a daemon process. You could try running the script through a "screen", which you can detach from using ^A^D (Ctlr+A, Ctlr+D), and reattach using "screen -r". This will allow you to resume previous screen sessions on the Linux server even if your client disconnects. The "HTTP Error" occurs during querying when an URL source is not accessible by the BioMart server. Do you have a firewall that prevents access to outside resources? -jack On 11-05-19 9:55 AM, "Zhiliang" <[email protected]> wrote: Thanks to the hard work by the Biomart team - I was able to download the new Biomart version 0.8 to install and deploy on my RH Linux server... Everything seems working alright, except that the serve "ram away" a few times (quitely die). The observations are: I use Xming to operate remote Biomart GUI on my Windows XP. I can start the Biomart with "biomart-server.sh" GUI. When done I can close the GUI and release the shell to it prompt, and even logout from the shell, while Biomart is running. However I have to keep my Xming alive in the background. When I attempt to turn off Xming, it warns: There are currently 2 clients connected; Shut down these client/server? If I close Xming on my PC, the Biomart on my remote Linux dies. I also tried to run the server from the command line, as in: > /usr/local/biomart/dist/scripts/biomart-server.sh start Sometimes it complains there is already a biomart running, while "biomart-server.sh stop" won't really stop it, that I had to kill the process (it's a short process name, different from normal) to try again. Sometimes it starts, but I got errors on the http/web: HTTP Error, problem accessing /.Reason: Cannot find Any advice please? Zhiliang _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
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