Hi Jack, So I have finally managed to get our biomart out of the firewall. Here it is: tparvadb.ilri.cgiar.org/biomart/martview
So for instance if I start the martconfigurator for Biomart 08: ./dist/scripts/martconfigurator.sh then on the add source, I add: tparvadb.ilri.cgiar.org then select "biomartschema" as the mart with all the default datasets then select "Muguga" as the value for "Add access point" then start the server. What you then get is a similar access point like what we have on biomart 0.7. Now here is where the problems set in: *In the filters section:* If you select "Chromosome 1" under the chromosome(s) selection which is under the REGION, and also select "EST" under the feature(s) selection *In the attributes section:* Select any or all of the attributes under the "Region & chromosome info" and/or "feature info" *Results:* Biomart 07: a table with results is presented. Biomart 08: no results found This is what I don't understand. Any assistance please? Cheers Howard On 16 May 2011 20:19, Jack Hsu <[email protected]> wrote: > Hi Howard, > > You should see a folder dist/logs with two types of logs: request and > stouterr. You want the latter type, and it should be timestamped with the > current date. > > You may also want to set “log.level = debug” somewhere in your > biomart.properties file, and do a restart on the server. The file should be > under the dist folder. > > -jack > > > > On 11-05-16 12:50 PM, "Howard Wilder" <[email protected]> wrote: > > Hi All, > I was trying out biomart08 rc6. The installation went fine, and I was able > to do a quickstart after having provided a URL to our working mart, and > started the server. > The only concern is that what works in biomart07 doesn't seem to work in > biomart08. > Basically, I could select a particular chromosome form a drop down list on > the "filter" section and select a couple of attributes to be returned and > this brings results, however this is not the case for rc6 after performing > the same selections, it returns "no results found". > Sorry I can't provide a URL to the BioMart07 as its stuck behind a > corporate firewall, thus only visible internally. > I can provide the error log though or any files that can help in diagnosing > the problem, if you can point me to where this is on the release candidate 6 > directory > Many thanks > Howard > > >
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