Dear David, >From the BioMart martview http://www.biomart.org/biomart/martview select >Ensembl genes (62) (database) and Homo sapiens genes (dataset). In the Attributes section, select Sequences tab and Protein. (By default, Ensembl Gene ID and Trasncript ID are selected under the header tab, but you may also select additional header information.) Click Results. The first 10 sequences are shown. The FASTA format is set automatically. To view the the complete set of your results, enter your email address into the 'Email notification to" box, and click on Go.
I hope that helps, Elena From: David Matthews <[email protected]<mailto:[email protected]>> Date: Mon, 6 Jun 2011 10:46:46 -0400 To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [BioMart Users] download of all ensps Dear Biomart, Apologies for the simplicity of my question, can you tell me how to download a fasta file of all the human proteins known including all known splice variants. Ideally I'd like a fasta protein sequence for every human ENST transcript but I'm not sure I'm setting up my request properly - can you help? Best Wishes, David. __________________________________ Dr David A. Matthews Senior Lecturer in Virology Room E49 Department of Cellular and Molecular Medicine, School of Medical Sciences University Walk, University of Bristol Bristol. BS8 1TD U.K. Tel. +44 117 3312058 Fax. +44 117 3312091 [email protected]<mailto:[email protected]>
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