Hi David, One way to do it, is to run two queries. In the first query, in Attributes – Features tab select Canonical transcript stable ID.
In the second query, under Filters – Gene – ID list limit, Select Ensembl transcript ID and enter the list of IDs retrieved from query 1. In the attributes, select Sequences/protein as you have done before. I hope it helps. Elena From: David Matthews <[email protected]<mailto:[email protected]>> Date: Tue, 7 Jun 2011 10:43:05 -0400 To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [BioMart Users] downloading canonical proteins from biomart Dear Biomart, Another question about the download of ensp/enst/ensg data. Now I have my complete list of all transcripts and their associated proteins how do I restrict this list to just the representative protein for each gene? That is the one version of the gene that is considered the "canonical" version? I now want a list of one protein for each ensg and I'm not sure how to get this. Best Wishes, David. __________________________________ Dr David A. Matthews Senior Lecturer in Virology Room E49 Department of Cellular and Molecular Medicine, School of Medical Sciences University Walk, University of Bristol Bristol. BS8 1TD U.K. Tel. +44 117 3312058 Fax. +44 117 3312091 [email protected]<mailto:[email protected]>
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