On 2011-06-10, at 4:54 AM, David Croft wrote: This was indeed one of the problems. I also found that (for rice) I needed to point the BioMart at http://plants.ensembl.org/biomart/martservice, rather than athttp://www.biomart.org/biomart/martservice, as we had originally being doing.
One thing that I noticed was that the virtual schema we had to use was plant_mart_9. Will this always remain the same, or is the "9" some kind of release or version number that could change with time? The virtualSchema change should allow you to query www.biomart.org<http://www.biomart.org>. The other server (plants.ensembl.org<http://plants.ensembl.org>) is not run by us, it is run by Ensembl, so I can't comment on their naming scheme and whether it may change with time. I imagine that it will, though, when they release version 10.
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