Dear Biomart Users,
I'm trying to set up a prototype using Biomart over a mysql database and I'm
facing some problems when starting the server and trying to keep the server
up for a long time (As an operating system I'm using Suse 10 and the Biomart
version is 0.8 release candidate 6):
1. The first thing I would like to ask you is why I can run the server
through martconfigurator (loading the registry file and then starting the
server) but if I try to do the same using the "biomart-server.sh
start/restart" command the server doesn't start I get the following message
in the web browser:
HTTP ERROR: 404
Problem accessing /. Reason:
NOT_FOUND
------------------------------
*Powered by Jetty://*
The output of the "biomart-server.sh start" command is the following:
Shutting down BioMart: 24945
Starting BioMart:
nohup: appending output to `nohup.out'
BioMart running pid=25125
I've checked that the application settings point to the correct registry
file (test):
##################################################
# BIOMART APPLICATION SETTINGS
##################################################
biomart.debug = false
biomart.registry.file=/root/test
biomart.registry.key.file=/root/.test
biomart.sidebar = true
2. The other issue is how to keep the server up. I'm connecting to the
server via ssh and I'm using the screen command to start the server (via
martconfigurator) and then I detach the screen to keep the process running.
Then I realised that when closing the ssh connection (putty) the server is
usually down. Could you advice me about this issue?
Just one additional thing, I realised that the is a session.timeout setting
that I commented to prevent the server to go down after the specified amount
of seconds.
I really appreciate your help,
Isaac Cano
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