Hi
We are testing the new version of Biomart (0.8 rc 6) to replace our
current install (v 0.7). We build mart on the GMOD-Chado schema using
the feature table as main table for our marts. With the new version we
get an error when we try to do the same thing. In the Add data source
panel, we choose the feature table from the public schema, then we click
add and we get :
[AWT-EventQueue-1] INFO martconfigurator - Done saving settings
[Thread-104] INFO martconfigurator - Initialize source schema
[Thread-104] INFO martconfigurator - Done synchronising
[Thread-104] ERROR martconfigurator - duplicated relation
feature.[feature_id_1057] -> feature__feature_genotype.[feature_id_1057]
[AWT-EventQueue-1] ERROR martconfigurator - Exception occurred in
MartBuilder
org.biomart.common.exceptions.BioMartError:
org.biomart.common.exceptions.AssociationException: A relation between
these two keys already exists.
at
org.biomart.configurator.controller.MartController.processParentDatasetTable(MartController.java:231)
at
org.biomart.configurator.controller.MartController.generateDatasetTable(MartController.java:369)
at
org.biomart.configurator.controller.MartController.generateDatasetTable(MartController.java:484)
at
org.biomart.configurator.controller.MartController.synchronise(MartController.java:900)
at
org.biomart.configurator.controller.MartController.suggestMarts(MartController.java:1375)
at
org.biomart.configurator.controller.MartController.requestCreateMartsFromSource(MartController.java:1599)
at
org.biomart.configurator.controller.ObjectController.initMarts(ObjectController.java:98)
at
org.biomart.configurator.view.component.container.SourceGroupPanel$1.construct(SourceGroupPanel.java:85)
at org.biomart.common.view.gui.SwingWorker$2.run(SwingWorker.java:128)
at java.lang.Thread.run(Thread.java:619)
Caused by: org.biomart.common.exceptions.AssociationException: A
relation between these two keys already exists.
at org.biomart.objects.objects.Relation.<init>(Relation.java:141)
at
org.biomart.objects.objects.RelationTarget.<init>(RelationTarget.java:17)
at
org.biomart.configurator.controller.MartController.processParentDatasetTable(MartController.java:225)
... 9 more
Do you have any idea ?
Thanks
--
Aminah Olivia KELIET
Ingenieur d'études en Bio-informatique
Unité de recherche en Génomique-Info
INRA Centre de Versailles
Route de Saint Cyr
78026 Versailles Cedex
email: [email protected]
url:http://urgi.versailles.inra.fr
tel: 01.30.83.37.74
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