Hi Aminah, Is that chado schema publicly available? It would be very helpful if we can test it out here.
Also, I am just curious how your current mart is built. If you'd like to try 0.8 with the existing mart db, you can directly import it using martconfigurator. Best regards, Junjun Sent from my BBerry ----- Original Message ----- From: Aminah Keliet [mailto:[email protected]] Sent: Tuesday, July 26, 2011 10:34 AM To: [email protected] <[email protected]> Subject: [BioMart Users] biomart v0.8 : error creating mart from Chado schema Hi We are testing the new version of Biomart (0.8 rc 6) to replace our current install (v 0.7). We build mart on the GMOD-Chado schema using the feature table as main table for our marts. With the new version we get an error when we try to do the same thing. In the Add data source panel, we choose the feature table from the public schema, then we click add and we get : [AWT-EventQueue-1] INFO martconfigurator - Done saving settings [Thread-104] INFO martconfigurator - Initialize source schema [Thread-104] INFO martconfigurator - Done synchronising [Thread-104] ERROR martconfigurator - duplicated relation feature.[feature_id_1057] -> feature__feature_genotype.[feature_id_1057] [AWT-EventQueue-1] ERROR martconfigurator - Exception occurred in MartBuilder org.biomart.common.exceptions.BioMartError: org.biomart.common.exceptions.AssociationException: A relation between these two keys already exists. at org.biomart.configurator.controller.MartController.processParentDatasetTable(MartController.java:231) at org.biomart.configurator.controller.MartController.generateDatasetTable(MartController.java:369) at org.biomart.configurator.controller.MartController.generateDatasetTable(MartController.java:484) at org.biomart.configurator.controller.MartController.synchronise(MartController.java:900) at org.biomart.configurator.controller.MartController.suggestMarts(MartController.java:1375) at org.biomart.configurator.controller.MartController.requestCreateMartsFromSource(MartController.java:1599) at org.biomart.configurator.controller.ObjectController.initMarts(ObjectController.java:98) at org.biomart.configurator.view.component.container.SourceGroupPanel$1.construct(SourceGroupPanel.java:85) at org.biomart.common.view.gui.SwingWorker$2.run(SwingWorker.java:128) at java.lang.Thread.run(Thread.java:619) Caused by: org.biomart.common.exceptions.AssociationException: A relation between these two keys already exists. at org.biomart.objects.objects.Relation.<init>(Relation.java:141) at org.biomart.objects.objects.RelationTarget.<init>(RelationTarget.java:17) at org.biomart.configurator.controller.MartController.processParentDatasetTable(MartController.java:225) ... 9 more Do you have any idea ? Thanks -- Aminah Olivia KELIET Ingenieur d'études en Bio-informatique Unité de recherche en Génomique-Info INRA Centre de Versailles Route de Saint Cyr 78026 Versailles Cedex email: [email protected] url:http://urgi.versailles.inra.fr tel: 01.30.83.37.74 _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
