We are seeing strange things occur with the protein ID filter. For example,
transcript ENST00000345514 is being filtered out by the following search
below. However, you can see that it indeed has a Preotin ID shown here:
http://useast.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000127152;r=14:99635624-99737861;t=ENST00000345514
. Any idea why this is being filtered? Could this be a bug in Biomart/Data
or User Error?
Manual (non-Perl)
Homo sapiens genes (GRCh37.p3)
Filters
with protein ID(s): Only
Attributes
Ensembl Gene ID
Ensembl Transcript ID
Same problem occurs using Perl filter as well
$query->addFilter("with_protein_id", ["Only"]);
Thank you,
Phillipe
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