Hi Syed,
I am using the same database server for both source and target. I tried
materialising only the gene dataset first, if I send it to the mart
runner, I get the same error as before. but I am able to send the SQL to
a text file and manually import it to the database and I can see 7
tables getting created.
+---------------------------------------------+
| Tables_in_uma_mart_11 |
+---------------------------------------------+
| gene |
| gene__alt_allele |
| gene__gene_attrib |
| gene__operon_transcript_gene |
| gene__splicing_event |
| gene__transcript |
| gene__unconventional_transcript_association |
+---------------------------------------------+
thanks
Uma
On 07/10/11 12:26, Syed Haider wrote:
Hi Uma,
few things you need to make sure if they are correct. try
materialising only gene dataset first ? Make sure both source schema
and target mart should be on same database server. Try generating only
SQL first instead of creating a mart directly, see if this works ?
Let me know how you get on with these options and which ones do work.
Best,
Syed
On 05/10/2011 14:23, Uma Maheswari wrote:
Hi Syed,
I tried adding just one core database and selected the main
tables(gene,transcript,translation) and when I try to materialise, I got
an error message "An error occurred while building mart (see logs for
more information)" but the log files in /dist/logs/ are empty. But in
this process we are not specify the biomart schema etc. Should a add
access points before materializing? In 0.7 we used a xml file to give
all the specifications.
thanks for the help
Uma
On 05/10/11 13:59, Syed Haider wrote:
Hi Uma,
Have you tried adding your new core database independently ? what
happens when you add the source schema and then materialise it into a
mart. this needs to work independently, first and foremost. Let me
know how you get on with this.
Best,
Syed
On 04/10/2011 16:34, Uma Maheswari wrote:
Hi All,
I am trying to create a registery file (0.8) for Ensembl_genomes
mart. I
am able to import the 0.7 register and save it using
release-0_8-candidate_6 martconfigurator. I am able to see the two
(registry.xml and the .registry) new registry file. But I am not
able to
open the saved file "0.8 registery file". I don't get any error
message, I am not sure if I am missing something,
Basically I am trying to add a new core database to the existing mart
using release-0_8-candidate_6/martconfigurator, which will be the
easiest way do.
Thanks for the help
Uma
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