Hi Christophe, The charts are not documented as they were developer for in-house use.
They rely on the metainfo property (encoded as JSON string) on a Config. Examples: Affected Pathways: http://dcc.icgc.org/martservice/gui.json?name=Pathway Affected Genes: http://dcc.icgc.org/martservice/gui.json?name=Genes The aggregation property in the metainfo determines how the raw data is processed (from TSV), and the rendering property determines how the data is displayed (e.g. chart). You can also check how the attributes are configured for the two Configs above: Genes: http://dcc.icgc.org/martservice/attributes.json?datasets=hsapiens_gene_ensembl_hopkinsBreast&independent=false&allowPartialList=false&config=affected_genes_analysis Pathways: http://dcc.icgc.org/martservice/datasets.json?mart=affected_pathways_kegg If you want to dig even urther, you will need to view the JavaScript source codes under web/webapps/martapp/js/src/ui.queyresults.js (data processing) web/webapps/martapp/js/src/renderers/charts.js (data rendering) Sorry that there aren't more useful documentation for this. -jack On 2011-10-28, at 12:22 PM, Arek Kasprzyk wrote: Hi Christophe, once gain Jack is your man here. I am sure he won't mind chipping in to this discussion :) a On Fri, Oct 28, 2011 at 12:13 PM, Christophe Klopp <[email protected]<mailto:[email protected]>> wrote: Hi Arek, I've just played with the graphical renderers like boxplot, histogram and chart. They are really interesting and quiet easy to implement. I'm wondering if there is some documentation available on the data structure. The example I've found uses a array with 5 columns and I not sure which one is usefull and which one is not. Cheers, Christophe -- ==================================================================== = Christophe KLOPP BIA INRA Toulouse 31326 Castanet-Tolosan = = Tel: 33 5 61 28 50 36 Email: [email protected]<mailto:[email protected]> = = http://www.sigenae.org/ = = http://bioinfo.genotoul.fr/ = ====================================================================
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