Hi Hendrik, i believe this issue has been reported on the list before and (Rhoda to correct me here)that it is going to be fixed in the next Ensembl release?
a Dear Biomart team, I have entered the following request into the Biomart interface http://www.biomart.org/biomart/martview/ Dataset: Homo sapiens genes (GRCh37.p5) Filters: Refseq mRNA ID(s) [e.g. NM_001195597]: [ID-list specified] --> with NM_000211 in the list Attributes: Ensembl Gene ID, Ensembl Transcript ID But I get always the following error message: ---------------- Serious Error: Error during query execution: Table 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist ERROR: caught BioMart::Exception::Database: Error during query execution: Table 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist If you repeatedly get directed to this error page, there may be a problem with your current session parameters. To clear your session and start with a clean slate, please click the *New* button below. Stacktrace: Exception::Class::Base::throw /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:241 BioMart::Dataset::TableSet::_fillAttributeTableWith /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:124 BioMart::Dataset::TableSet::_getResultTable /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/DatasetI.pm:1170 BioMart::DatasetI::getResultTable /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:472 BioMart::QueryRunner::_processPath /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:374 BioMart::QueryRunner::_getResultTable /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:194 BioMart::QueryRunner::execute /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Web.pm:2433 (eval) /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Web.pm:2201 BioMart::Web::handle_request /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview:96 (eval) /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview:95 ModPerl::ROOT::ModPerl::Registry::srv_biomart_server_biomart_2eorg_biomart_2dperl_cgi_2dbin_martview::handler /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 (eval) /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 ModPerl::RegistryCooker::run /usr/lib/perl5/ModPerl/RegistryCooker.pm:170 ModPerl::RegistryCooker::default_handler /usr/lib/perl5/ModPerl/Registry.pm:31 ModPerl::Registry::handler -e:0 (eval) -e:0 ------------------ How do I get a Refseq/Ensembl id mapping? Thanks for any help. Regards, Hendrik -- *Always Outnumbered, Never Outgunned*
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