Hi Arek,
I resolved one problem with the display of GO and it was due to not
having the Ontology mart loaded.
My problem is now just with the other ontologies in the mart.
I am able to generate templates and export them, based on the GO
template in the marteditor. The first export is theoretically fine,
but the accession boxes do not show in that same way as they now do for GO.
If I reopen the template to try and alter something exporting the
template causes the marteditor to fail with a segmentation fault.
Sometimes that change that was made before exporting has remained, other
times not, but either way it is still not possible to view the text
boxes or search with xml on the accession for other ontologies.
Regards,
Mark
On 04/11/11 15:19, Arek Kasprzyk wrote:
Hi Mark,
some basic stuff first. Did you check that these filters are not set
to hidden?
a
On Fri, Nov 4, 2011 at 7:20 AM, Mark McDowall <[email protected]
<mailto:[email protected]>> wrote:
Hi Guys,
I am trying to get a BioMart service up and running. I have
managed to get the database to build, but I have now run into the
wall of martview.
Getting the webserver up and running seems to be ok, but it is
getting the filters to display that I am having trouble with.
Using the marteditor programme, I can get the drop down lists to
display, but sections where I want then to search an ontology with
the ID or the name of the term do not get displayed on the
website. I thought that this was just a display problem so I
tried posting XML queries, but they too also fail saying that the
filter name is unrecognised.
Would anyone know where to go from here?
I am running BioMart 0.7.
Thank you,
Mark
--
Mark McDowall Ensembl Genomes Bioinformatician
EMBL-EBI Tel: +44-(0)1223-494589
<tel:%2B44-%280%291223-494589>
Wellcome Trust Genome Campus
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
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--
Mark McDowall Ensembl Genomes Bioinformatician
EMBL-EBI Tel: +44-(0)1223-494589
Wellcome Trust Genome Campus
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
_______________________________________________
Users mailing list
[email protected]
https://lists.biomart.org/mailman/listinfo/users
