Syed,
Got it. Thank you!
Zhiliang
On Sat, 5 Nov 2011, Syed Haider wrote:
Date: Sat, 05 Nov 2011 20:24:41 +0000
From: Syed Haider <[email protected]>
To: Zhiliang <[email protected]>
Cc: Arek Kasprzyk <[email protected]>,
"[email protected]" <[email protected]>
Subject: Re: [BioMart Users] Biomart data source
Hi Zhiliang,
Everything you have done so far is correct. Once you choose the URL
option, select 'ensembl' in the left pane. Then scroll all the way to
the bottom in the right pane, and you will see 'btaurus_gene_ensembl'.
Thats your dataset. These are listed as internal names.
HTH,
Syed
On 05/11/2011 04:18, Zhiliang wrote:
Yes, URL to www.biomart.org.
I am running Biomart version 0.8
Zhiliang
On Fri, 4 Nov 2011, Arek Kasprzyk wrote:
Date: Fri, 4 Nov 2011 19:44:28 -0400
From: Arek Kasprzyk<[email protected]>
To: Zhiliang<[email protected]>
Cc: [email protected]
Subject: Re: [BioMart Users] Biomart data source
and the URL points to default www.biomart.org?
which version of biomart are you running?
a
On Fri, Nov 4, 2011 at 7:31 PM, Zhiliang<[email protected]> wrote:
Arek,
I have a local Biomart running in /usr/local/biomart/, and started my
MartConfigurator by "./dist/scripts/**martconfigurator.sh". Once it is
fired up, I choose to use "URL" option for data download. ... Is this what
you asked for?
Thank you,
Zhiliang
On Fri, 4 Nov 2011, Arek Kasprzyk wrote:
Date: Fri, 4 Nov 2011 18:12:59 -0400
From: Arek Kasprzyk<[email protected]>
To: Zhiliang<[email protected]>
Cc: [email protected]
Subject: Re: [BioMart Users] Biomart data source
Hi Zhiliang
Where are you connecting to with MConfigurator?
a
On Fri, Nov 4, 2011 at 5:58 PM, Zhiliang<[email protected]> wrote:
Hi there,
At the http://www.biomart.org/ -> Ensembl -> Ensembl genes 64, I could
see a dataset "Bos Tarus genes, UMD3.1". But from my MartConfigurator I
could not find it. Could someone advice please?
Thank you,
Zhiliang
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